Array 1 174753-178507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXZ01000004.1 Pseudoalteromonas ruthenica strain S3137 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 174753 28 100.0 32 ............................ TCAACAAGGGGGCAGAAGCAGTCAGCGACAGT 174813 28 100.0 32 ............................ AGGTTGGCAAATTTAAGATTGCTTCTCGAGAA 174873 28 100.0 32 ............................ TGCTGGCCTTTCTTACTGTGAACGCTATTTTT 174933 28 100.0 32 ............................ CGTTGTCTCGCCCAGGTGCTCGCTAAATGCGT 174993 28 100.0 32 ............................ GCGCCAAAAGGTGGCCGCATGATGCAGCCAAT 175053 28 100.0 32 ............................ GGTTTCAGAAATCATAGGAAGATTAGTTGATG 175113 28 100.0 32 ............................ TTCACCAAGTGCACAAAAGTCTGGTATGGCCA 175173 28 100.0 32 ............................ TTCTGCGTGCCGTAGACGATGCCTAGTGCGTT 175233 28 100.0 32 ............................ ATCGATAAACAGGTTTTGCGCAAATTGGTGGC 175293 28 100.0 32 ............................ TGTTCGCCCTGATAACGTGCCAGTCACTTCTG 175353 28 100.0 32 ............................ TTCTGAATCTTTATCTAATCAACGCAATAAGA 175413 28 100.0 32 ............................ TTTGAATGTTGAACACTTCGTTTCTGTCTTTG 175473 28 100.0 32 ............................ TGCTGCTCGACAATATCCTCATCTGATAATTC 175533 28 100.0 32 ............................ TTCTGGAGAAACTAGCCAAAGAGAGGAAAATG 175593 28 100.0 32 ............................ TCTCAAACTCTCCAAGAGTGCACAGGTTATGT 175653 28 100.0 32 ............................ AGCCAGCAACCGACACCCTCAGACATGATTGC 175713 28 100.0 32 ............................ TGACTTAATGATTAACAACACAACGGGCAAGT 175773 28 100.0 32 ............................ AGCCTTCGCGCTCGTAGACATCAATGTGACCC 175833 28 100.0 32 ............................ AAGATGAAAATAATCACGAAGGCCACGACTCC 175893 28 100.0 32 ............................ ATGAAAAAAGTAAACATCTTAAAAAGCAAACT 175953 28 100.0 32 ............................ AACGGCGTAAGCTCCAATGCAAAATGACATAA 176013 28 100.0 32 ............................ TTGACGGTATTATCGACCAGTTATCAGGTTCC 176073 28 100.0 32 ............................ TGTCTATCAACGTTATTCGATAGCCAATTGAC 176133 28 100.0 32 ............................ AATAGCCTTACGTGTACGAAGCGACAGCGGCA 176193 28 100.0 32 ............................ TGATGACTGTGAGTAATATTTACAAGACTCAC 176253 28 100.0 32 ............................ AATGGTATCTCAGCCTTGAATTTACCTCTCGA 176313 28 100.0 32 ............................ ACTCAAACGATGTGATAATAGCTTTGCATGTT 176373 28 100.0 32 ............................ TGCAAATAATGCTCTTCTTCACCACTGCGAAG 176433 28 100.0 32 ............................ ACCCCTAGACCCCGAAGAAAACTGCTATGAAA 176493 28 96.4 32 .................T.......... AAAAGGCTGGCGTTATTTCGCTTACGGAGTCG 176553 28 100.0 32 ............................ TGAATATGACATCCCTGTTGTTGTCGGAGAAA 176613 28 100.0 32 ............................ TGTGCGCTGGTCGGTCCCGCAGTTATCGCAGA 176673 28 100.0 33 ............................ AGTCATAACCTTCTTCAAGTAGCAACTGAAACT 176734 28 100.0 32 ............................ TTACTATAGAAATCTGCTTGATTCGGTTTCGG 176794 28 100.0 32 ............................ GTCAGTTTCAGCGAGCGAGTTTTCTTCGCGTG 176854 28 100.0 32 ............................ TGGCTTATATCAGCGAGTATCGCCTCAGCGGC 176914 28 100.0 32 ............................ AGCAAGCAAAGCGGGTATTGCAAGTAAAGCAG 176974 28 100.0 32 ............................ TTATCGTTGCTTTCTGCGCGGGCCTGGTTGAT 177034 28 100.0 32 ............................ TATAAAGAAGCTTACAACGCGGTGCTGTGTGC 177094 28 100.0 32 ............................ ATACTTAGCTCGGGCCGCTTCTGAACCTTCTG 177154 28 100.0 32 ............................ TTTGGAAAAGCAATAAACGTTAATGCAGTGAA 177214 28 100.0 32 ............................ GTCAGCATTCAAATAAACACACTGCAAAGCAA 177274 28 100.0 32 ............................ AAATGCGGGGCAAACTGCAATCAAATTTAGAG 177334 28 100.0 32 ............................ ATCGCACCCCCGTTGAAGTGGTGAACGGCAAG 177394 28 100.0 32 ............................ TCGAACAACTCGCGGATTACATCACGGCCAAG 177454 28 100.0 32 ............................ ACCAAGCGCTTTGCAATAAAGATGATGAGTTT 177514 28 96.4 32 ...T........................ ATAAACGTGTAGTGGTGGCTGCGGCCAATAAA 177574 28 100.0 31 ............................ ATAACACTAGGTCTTGCTTTAAGACGTTTGC 177633 28 100.0 32 ............................ TACTCCCAAGTAATGGCAATAGGCAAGTTAAA 177693 28 100.0 32 ............................ ATCCGGCGGAATCAGCGGTAGCGGGGGCCATG 177753 28 100.0 32 ............................ AAGTTAAGGGCGGTTCGCTGGTGTCTGAGTCG 177813 28 96.4 32 .............T.............. GGTGCGAAATACATCACCGACAGCCTGGGCTA 177873 28 100.0 32 ............................ CGATTCTAATGGCGATGGTGTTTTAGATAATC 177933 28 100.0 32 ............................ TTTGGAGTCGTATGGTCGTATCAGCGCTTTTA 177993 28 100.0 32 ............................ TGGCAAATTCTTTAAACGGCTTTTGCTGAGAT 178053 28 100.0 32 ............................ AAACCGTCAGGCAACGCAAAATAAAGAAGTTA 178113 28 96.4 32 .................T.......... CAATGAGCTATAAAGTTAGAAAGCTTGGTGAT 178173 28 100.0 32 ............................ TATCAATTTGGAGCATGTAAGCGCCGCCGGTG 178233 28 100.0 32 ............................ TTGTCTCGGGTGCGGGCAGGGTCGAAACCAAT 178293 28 100.0 32 ............................ AGCCAAAGGCACGGGGCGCTTCCCCTAGATGA 178353 28 100.0 32 ............................ GTTTAAATTTCTGATGCACGATAACAACGGGC 178413 28 92.9 39 ................AT.......... TTTATAATTTATAATTTGTGAGCCATGATTGTCTCTAAT 178480 28 75.0 0 ...T.....T...T.....C....TC.G | ========== ====== ====== ====== ============================ ======================================= ================== 63 28 99.3 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GTACCAGAAGACGTAACATGGGTGAGTTTTACTCGTCAGCATGTTAAATCACCTGGGCGTATTGATCGTGAGATGCGAGGAAAGGCTGAACGGTGGTCGGCTAAAAGTGGTAAGCCTTTAGTTGAATGCTTAGCAGAGCTAGAAAGCACCAAACCTTCTTCAAAATGTGACTTACCTTTTGTTTATTTACATAGTCAACAAACAAAGCAACGTTCACCAGACACCAATAGTAAATACCCTCTGTTTATTGCGTTAGCAAAAGTTGAAATTGACCAACAAGGAGTTTTCGATTGTTATGGTCTTAGCGCAAAATCAAATGGAGATAGAGAGTTGGGCTGTGTGCCACAGTTCTAACAAATAAAGGATTTTTTCCCCTTTATTTTTGTTCTTTAAAAATTTGCTTAAAATACAGTGTGTTGCAACATCCTGTGAAATTAAGGTGAAACTGGGTTTTTATCTTAATAGCTTGTTGCAACTTACTTTTTTTCATTTACTCTATA # Right flank : GTGGGTTTGATGTTTTTGAGTTGTGTGTCGTTGAGTGGTTTAACCGTTTTTGCCATATCTACTATTCCCTGAAGGCCTTTAAACTTAAGGCTTTGGCGCAGCGACGTACTACGAGAACGAACACTATGTACTAACTTAGTACATGAAGCAGTACATAAACAACTGAATTTCAAAAAACGTGGGCGTACATTACAGGCATTAAAAAACCCGCTAAGTCTTTATTCTCAGCGGGTTTTAAACGTTTTCGAACTTAATCGAACAGTGAAGTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGGAAAACCTCGACCATCGGTCCTACATGTTTAGTGTCGTCTTTTGGTTAACCTTTGAGTCTCGGACGCACACGATAAACAAAGGCGAGGCCGCTTAGTTTTAACCCTTCAACCCCGGCCAGGGTTTCCGTAGCGAGTCTGTGTAGGGTGACACTTCAGAACCGGGTCCACAGACATACACCGGAGAAGTGCTAGCGGGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 541541-541296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXZ01000010.1 Pseudoalteromonas ruthenica strain S3137 contig0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 541540 28 92.9 45 .......................G.A.. GATTTAGTGTAGGTAAGGCTTTTAGCCTTACAAAACAAGTTTCTC 541467 28 100.0 43 ............................ CGGGATTGGGCCAAGCCCAACCTACAGTTTAGGTTGGTTTGTT 541396 28 100.0 45 ............................ CGAGATTGGGCTAAAGCCCAACCCACAGGTTCCGCCAGATGTGTT 541323 28 85.7 0 ......................C.CCT. | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 94.6 45 GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Left flank : CAAGTTTGCGTGAATTAAAGCAGCTTGCAAGCACTCATGGCTTTGCTGATATCGCCGCAAATGAAGAAGATGCTGACACCTTATTACAGCTGCTATTTTGCATGGTGATAGAGCCGACGATTGGCCAGCAACAGCCGTGTTTTGTGTATCACTTTCCGGCCTCGCAAGCGGCACTAGCGCGTCTTCATGAGCAAGACCCACGCGTTGCCGGGCGTTTTGAGCTGTATTACCAAGGGCAAGAGCTCGCTAATGGCTTTAATGAGCTGACCGACGCCAATGAACAGCGCCAGCGCTTTGCCAATGACAACAATAAACGTATTGCTAAAGGTCTTGAGCCCGTAGCCTTGGATGAAAACCTACTAGCAGCACTGGATGCCGGCCTACCACAATGTGCCGGAGTCGCCCTCGGAGTGGATCGTCTCGTGATGATTGCCTGCGGCAAAAAGCATATTCGCGAAGTGCTCAGTTTCGACATCGAACGCGCCTAACCTCAAATTATT # Right flank : TAAATAAACCGAATTCCAGTACGGGTATAATCGCACACTAGAGACAATCCCTTTTCGCAATGGGTTGGCAACGATGTACCTGGCTATGTGAATGCGCTGCTCATCCTCACGCAAAGCGTGGTCATAAAACCCGCTTTGCCAAACTTTACCGCGACGCTGTAATTGACGATTAACCATGGCTGCGGTGCAACCTTTTAGGTGCCGTATACAAGCGCTAAGATCGCTATGGTGCAGTAACACAAGCCCATGGAAGTGGTCTGGCATTAAGACCCAGGTTAACCATTGGCAGCCGCAAGCCTGCTCATTAGTTGTAATCGTGGTGCAAAATAGCTGTGCTAGTTTCGCAGAGGCAAAAAATGGTGTGCGTTTGTAACAACAAAAAGTAATAAAATACTCGCGGTGAATTTGCGAATAACGTCCTTTTAATAAATCACTATAAGGCATATTCAGCTCCTTTGAATATGGTGGACATTTAATTATAGCTCGAGAGTTACAAGGTT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //