Array 1 94623-95670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOM010000010.1 Vibrio cholerae strain C1C.1 Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94623 28 100.0 32 ............................ AGTAAGGTGGTTATCATGGCAAAGCATCACGT 94683 28 100.0 32 ............................ TAGCGTGGCGGGAGAGTTTGGCGGGCGCTTTG 94743 28 100.0 32 ............................ ATTGCTGCGGCCAGCATGTAGACAAAAGCAAG 94803 28 100.0 32 ............................ AAACAACGGAATCCCTAAACTGCATAACGTCT 94863 28 100.0 32 ............................ TTACGACATTTGCACTTTGAGTAGGCCGCGAC 94923 28 100.0 32 ............................ GCCAACCGTTATTGACGCGCTGCCTTCAATGC 94983 28 100.0 32 ............................ GTTGAGGACGCCAACAACTTCAACCTAGTGAT 95043 28 100.0 32 ............................ ATGACCGTATCGCCGCCTATCGTTTTCATTCT 95103 28 100.0 32 ............................ TTTAAATGACGCCGTGTGCGCATGACTCTTTA 95163 28 100.0 32 ............................ ACGAAGCGAAATCGACTTCAAGTCGCCAATAA 95223 28 100.0 32 ............................ TTATGTCCCGATACGTGAGAAACCAAACACTG 95283 28 100.0 32 ............................ GTTCTCGTCTAGCGCCTTATCTTTTGTTGTTG 95343 28 100.0 32 ............................ TCGCTCACAGTTTTAAAACAAAGTTTCGCCGC 95403 28 100.0 32 ............................ AGCCCGCCCCAACACCAAGAACCGTTGGTTTG 95463 28 100.0 32 ............................ ATGACACAAGGCCAGTTCGATGCGTTCACCTC 95523 28 100.0 32 ............................ TTTGGGCGTGACGTTGTATTCCCATGCTTTTA 95583 28 100.0 32 ............................ TTTGCGCTTGAACCATTCCAGCGACTCTTTTG 95643 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAATATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCACATGGGTTGTCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCCGTACCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAACATCACGCCCGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGAGCAAAGCGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTACAGAATGCGCTCATAACCTTGCACCATTTTACAAGTGTCGATATCCATGCCTGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAACGGTAGCTTTGCAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2623-3370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOM010000031.1 Vibrio cholerae strain C1C.1 Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2623 28 100.0 32 ............................ AAGTCATTACATGTAAGCCTTTTTATACTCGT 2683 28 100.0 32 ............................ ATAAATGACGAGACCATCCTCTTGCTCCTTAA 2743 28 100.0 32 ............................ GCGCACACTCATTTGATGGGTGTTTGGAAAGC 2803 28 100.0 32 ............................ ACAACCAATGCGCGGCGAGTGTCGAGCAAGCA 2863 28 100.0 32 ............................ AGTTTGATGTGCAGTTCGGCGTGGAGACGGAA 2923 28 100.0 32 ............................ ATCAACATAATATTCAGGATTATTTTTATATA 2983 28 100.0 32 ............................ ACCTCGCGGAATGAGTCAGGCCAAACCTACTG 3043 28 100.0 32 ............................ AACAGGTCAAAACAGAACGTCTATCACCGCCA 3103 28 100.0 32 ............................ TGAAGTTGGTTTTGTGATTGAATCTTTAGTGA 3163 28 100.0 32 ............................ TTTTTAACTCCTAGCGGCCTTTGTTCTGATAC 3223 28 100.0 32 ............................ TGAAACACCCAAAAACTATGACTCAGTAAAAT 3283 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 3343 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTTATCGCTGTATGTTTCAGCGTGATTGCCTCATTGAGTTGTAGCACCAACATGTTGTAAGTGGGTTTGTCGGAGAGGGTTTCCACATTGGCTGATTTTTAGGATGAAAGCCTGTATTGGTCAGTTCATAGGTAAAAGTTGAGCCAGTTCTAATTCAATGAAAGTCGAAGTTTGGTCAATGATTTCAGTGGGTTATTCTTGAGTTGGTTCAAATGTAAAGTGTTGAAGCTTAAGCATAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGATTACGGCGTTACGCGGTAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AAAACATGACCGCCAAAAAACGACAGTAGAAGGTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1450-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOM010000039.1 Vibrio cholerae strain C1C.1 Scaffold39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1449 28 100.0 32 ............................ TCCGACTGGATGATTGAGGCGGTCGGGAATAT 1389 28 100.0 32 ............................ ACCAGAGTGCAGAAGGTTAATGAGGTGGCACA 1329 28 100.0 32 ............................ AAGCAAGACTTCATCAACATGGGCGGCAAAGA 1269 28 100.0 32 ............................ GCGCACACTCATTTGATGGGTGTTTGGAAAGC 1209 28 100.0 32 ............................ ACAACCAATGCGCGGCGAGTGTCGAGCAAGCA 1149 28 100.0 32 ............................ ATCAACATAATATTCAGGATTATTTTTATATA 1089 28 100.0 33 ............................ CAGTAATGGTAAAACCGATTTCAGGTTCAATCT 1028 28 100.0 32 ............................ TGAAGTTGGTTTTGTGATTGAATCTTTAGTGA 968 28 100.0 32 ............................ TGAAACACCCAAAAACTATGACTCAGTAAAAT 908 28 100.0 32 ............................ TCACAACCCAAACGCAAGGGATAGATCATGAG 848 28 100.0 32 ............................ AAATCCAGATAGCCTGCCAAAGTCAATGGAAA 788 28 100.0 32 ............................ ATGAAGGCCACGACCACGCATAGGTGATAAAC 728 28 100.0 32 ............................ AATTAGCCGCCTTTGAGCGGCTTTTTTTTGCT 668 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 608 28 100.0 32 ............................ AAAACATGACCGCCAAAAAACGACAGTAGAAG 548 28 100.0 32 ............................ ACCAAATGAGCAAGCCACATCATAATCAAGCA 488 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 428 28 100.0 32 ............................ TGTTTAACCGCGAACCCATCACAGTAACTAGG 368 28 100.0 32 ............................ AGTTAGGCCGCAAGTGATCAATGGTGCAACCT 308 28 100.0 33 ............................ GATCTTGTAAAGATGGCGGTAGTAGATAGGTTC 247 28 100.0 32 ............................ TTCTTGTTGCATTTTTACCGCTTGCATTAGCT 187 28 100.0 32 ............................ ATCAGCTTATGCTGCTCTGTGATCACTAATTT 127 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 67 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCGCAGGAATGACTTTTGCGTTTGTTCTGAAATCTATGAATGTTGGGCTTGCTTACGCCATTTGGTCGGGCGCAGGCATTGCATTAGTATGTGTAGCGTCTGTCTTGATTTGGCAACAAAAATTCGACATATATGCCTTGGCTGGTGTGATGCTCATTGCATTAGGCACTGGATTAATCACATTAAAATCTAGTGTAGCACTCCAATAAATAGACTTAGCATATGGGCAATGTTACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGATTACGGCGTTACGCGGTAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 338-845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOM010000047.1 Vibrio cholerae strain C1C.1 Scaffold47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 338 28 100.0 32 ............................ CGCCATAGTTCACCGTGATTGTACCAGCCACC 398 28 100.0 32 ............................ TGAAACCCAATATTCAGCTTGGTTGGCACCAA 458 28 100.0 32 ............................ GTAAAGCTTATGATCGAGCATAAAAACAAACT 518 28 100.0 32 ............................ ACACGTGGGCGCTCAAGCTCTTTCAGCTGTTC 578 28 100.0 32 ............................ GTTCACGCGATCTTTTCATGGGTACGCCAATT 638 28 100.0 32 ............................ ATGCTTGATAGTCCGACGACAAGCTTACCTGT 698 28 100.0 32 ............................ AAAATCTGGCGCTCAGGCTGGAATTTCGGAAG 758 28 100.0 32 ............................ GTGACGGCCTTTTTCACGATGTTCTCCTAGCT 818 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAAAAA # Left flank : GTTTGGCTAATTATTTCAATGGTTTATTTTTGAGTTGTTTCAAATGTAAAGTGTTGAAGCTTAAGCATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGCTTGAGTTTGGTTGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTGCTGCTAAAGTTTCATAG # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATACAAAACAATGAGGTACTCTCTGTGAAATATATTTATAGCCTCTTAATTTTGATCATTATGAGTTCAAAATCTTGGGCAGGTTGCGATGAAGTAAGCTCGCAATGCCTAGTGATTGATAGTGATAAAGAAAGTTTTGAGTCGTGTGAAATTGCAATATGCGCAAATATGAGCGAATACCTAGTAAATGTAACATTGGAAAATGGTGGTAGGATTTTTATGCGCGACGATAGCCAGATACAGGTAATTAATGTAAATGGTAGTAAAGGTGTAACCAGTTCACCTCCGACCGACAAGAGTAATCTGACTTGTTATGCAATTGCCGACATGAGCGTAACATACTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOM010000049.1 Vibrio cholerae strain C1C.1 Scaffold49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 ............................ ATACTCAAAAAGTCGGTCTTTCTGCATCAATG 63 28 100.0 32 ............................ ATCCCGTACGTGGAAGCGCGCAAAGCGGGATG 123 28 100.0 32 ............................ TTTTGAATGCTCATAACCGAGCACAATTGCAC 183 28 100.0 32 ............................ GGCAATAAAGACAGCGAGTAGGTTTGAAAAAA 243 28 100.0 32 ............................ TATTCAAAAGCTGACCGTGTATTTCGCTTTTA 303 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCG # Right flank : ATACTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGTCGCGGTGGTTACGGCTGTTGCGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGTTTCATGGAGGAAACATGACACATCATGAGTTATTAGATAAAGCACTTTATAGCAGTGCAACAATTCATCAACCTCATTCTTTAAAGGCGTATCTATCAGCTAAAAACCTCTATGATCACCTTGGGCAACCCCCAAATATATGGGCTCAAACAAGCCATTTAATCAACCAAAGTGAACTTAAGGTGTCATGCGTTTACTCCGACACTGTTCAATCCCCTAAGTTTTCAGAACTTCGTATAGAAAGAATATTGCGGCGAGGCATCTATCCAGCAGCCTATCAGGCGATAGTACAATGGCATGAAAACAAGGGGTTTAATGACATATTTTCTCACTATGTATCGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //