Array 1 40985-42265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZB010000080.1 Clostridium botulinum C/D strain IZSVe-TV_5850_15 NODE_11_length_74771_cov_265.605_ID_10212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 40985 30 100.0 36 .............................. GCTTTAACATTATCTTTATTCATCCAAGAATAAACA 41051 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 41116 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 41182 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 41249 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 41315 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 41381 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 41445 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 41512 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 41578 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 41644 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 41709 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 41775 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 41841 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 41907 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 41972 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 42039 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 42105 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 42171 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 42236 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CCGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 49178-50649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZB010000080.1 Clostridium botulinum C/D strain IZSVe-TV_5850_15 NODE_11_length_74771_cov_265.605_ID_10212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 49178 30 100.0 36 .............................. ACGTCATTTATAATATTTTCATTGCCACTCTTAGAA 49244 30 100.0 36 .............................. ATTTGGTAATGCAGGTATACAAGTAGTACAACAACC 49310 30 100.0 35 .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 49375 30 100.0 38 .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 49443 30 100.0 37 .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 49510 30 100.0 36 .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 49576 30 100.0 36 .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 49642 30 100.0 36 .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 49708 30 100.0 36 .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 49774 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 49839 30 100.0 35 .............................. ATTAGTTTACCACACTTTGGACACATTCTCATTAG 49904 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 49970 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 50034 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 50100 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 50166 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 50231 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 50298 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 50362 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 50429 30 100.0 36 .............................. AAAGTAGTTATTTTGAAACTTATAAATACATTAATC 50495 30 90.0 30 .......A.......T..........T... TTGCATATGTTAAAATAGAAATAAATGTAG AAAC [50519] 50559 29 83.3 31 ......CT....T...-...A......... ATATTTAGTTTTAATTCGCAAGGATTAGTAT T [50573] 50620 30 83.3 0 ..............TT..A....C.....C | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 98.1 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAGCATATAGCTAATGTTCGATTTATAGAAGATATTGATATTGAAGATATTCATGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGAGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGATATATGAATTAAACAATACGAACAATATATATAAAATTAATAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : CGAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGATGTTTGATTTAAAAATAGATAATATATATGCACATATAAACAAAGAAGCAAAAGAGACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACGCATAATTATACCGAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGATTTCAACAAAATCGAATGGATAACAAGTTAGATGAAAAATATATAGATTACACTTACCATAGTGAATTATCTGCATTGTTGTTTATAGATATAGAATATAATAATATTAAGGAATATACATTCAGTAATAATAGAAAACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 9517-12502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZB010000097.1 Clostridium botulinum C/D strain IZSVe-TV_5850_15 NODE_63_length_14530_cov_87.0941_ID_10316, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9517 30 100.0 35 .............................. GGGCATATAAAAAGCTTAAGTTCATACACCACTTG 9582 30 100.0 37 .............................. TTAGTAGCTTTATCTTTATCTACTGCACTAGGTTCAG 9649 30 100.0 36 .............................. CCTTGTAATGTTTTTACCTCATTCTTTAAAGATTCT 9715 30 100.0 35 .............................. CCAATTGAACTCATGAAAGAAATTATGTTAAATGG 9780 30 100.0 36 .............................. AGTAGTGGTGGTATCGATAGAATTGATTCTATTTGT 9846 30 100.0 36 .............................. GTATTAGAGTTATTGTCGTGCCTTTTACTACGTTTT 9912 30 100.0 35 .............................. AGCGTAGATACAACTTTAATTTACGCAGAATTAGA 9977 30 100.0 36 .............................. ATTTTTAGTTCTGCACAAACGAGTGGAATTATAATT 10043 30 100.0 36 .............................. TAGTGTCTAACTACTCTATTTATAGATATATTGTAC 10109 30 100.0 37 .............................. TAATTAAATTATTTAACAAATTGTCTTTTGTATTACT 10176 30 100.0 37 .............................. TTACAACAAATGTACCATCTTCAAAATCCATTTCAAC 10243 30 100.0 36 .............................. TCAAAAACAGTACTCAATCCGGATTTTTCTATAATT 10309 30 100.0 37 .............................. TTTAATCACTCCTTTCTAAACTGGTCGAATTCGACCA 10376 30 100.0 35 .............................. AGAAAAATGGACAAGTCTTTGGCAAAGTTGTTTAA 10441 30 100.0 37 .............................. TGATATATTAGCATAAGTCGTCCCGCGAATTATAACT 10508 30 100.0 34 .............................. TTGCCCTCTATGAGATAATTATTGTCTTTAACTG 10572 30 100.0 35 .............................. AATAGTACACTAAAGGCGTTACTATCTGTTGCATT 10637 30 100.0 37 .............................. TGTCATAATCGCAAAATAACACAATAACCACATCCCC 10704 30 100.0 35 .............................. TAACCAGCAGTTTCCCAATATGGCGGATCACAGAA 10769 30 100.0 34 .............................. CTATCCTCTGGTATCTTATCTATATTTAAATTAT 10833 30 100.0 35 .............................. AACTTCAAGGGGCAAATTTTTGTAAAGTGAGGTTG 10898 30 100.0 36 .............................. TTGCGTGCTTATGGTTAATAAAAGTTATTTTACAGA 10964 30 100.0 37 .............................. GAACCTGTACCATATAGTATTTTTAAATTTCTAGTTA 11031 30 100.0 35 .............................. AAGTTTTCTATAAAAGTATGTTCAGCACTTGAATT 11096 30 100.0 36 .............................. AAGGTAACTACAAAAGACCCCGTAGTCTGGTATATT 11162 30 100.0 35 .............................. TTCCATTTTGTTCTAGCATCTGCAATCGCTACATA 11227 30 100.0 35 .............................. TACAAATGCAATACAGAATAGTTATAAATATTTTT 11292 30 100.0 37 .............................. AAAGATAATTTAAAGGGGTTTAACGTAATTACTTTAA 11359 30 100.0 36 .............................. GAAGAAAACTCACAGTTTTTAATAAAATCTATAATT 11425 30 100.0 37 .............................. ACGTCTTCTAATAGTCCTTCAAATTCTATTGGCATAA 11492 30 100.0 36 .............................. ATCTTTTTGTTTTTCTTCCGATCTTTGTACTTACTG 11558 30 100.0 35 .............................. TATTCTAACTTCACATCCTTTTAAAGGTCGCCATT 11623 30 100.0 36 .............................. TGGGAAAAGTTACGCACGAAACTTCTTTAATGTCTA 11689 30 100.0 35 .............................. TTTCCAGTGAGCAATAGAAAACAGTACCTTTTCTG 11754 30 100.0 36 .............................. CTTGATTTATTGAAACCATATTGGGAAATGGCGAAC 11820 30 100.0 34 .............................. AGAAAAATAACTTCTAAACTTAATTTCAATATAT 11884 30 100.0 36 .............................. TCAATTAAAATAAGGGCATTTCGAACATCTACTATG 11950 30 96.7 34 ...............T.............. AATTTTATATACATTTTTAAAATTTTACTAAAAA 12014 30 100.0 36 .............................. ATTAAAAGTTAATATATTTTTTAATTTAATTTTATT 12080 30 100.0 36 .............................. ATTCTAAGTATCCATAAAGCTTGTTGAGCCACATAC 12146 30 100.0 35 .............................. AATGAAATAGGCAATTCATAATCTACAGTGTTTAT 12211 30 100.0 35 .............................. ACGTTTGAATGTGCTAAAATATAATCTTCAACTGC 12276 30 100.0 36 .............................. CATGAAACAATAGCTGAAAATCAAGAGAGGGAACAC 12342 30 100.0 35 .............................. AAAATAAGACATGCACTTCTTTTGCCATCTTTTGT 12407 30 100.0 36 .............................. CACCTTCTTTCTCTTTTGGTATCCATATTTATTCTT 12473 30 96.7 0 ...............T.............. | ========== ====== ====== ====== ============================== ===================================== ================== 46 30 99.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAAAGGGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAGCTCATTATCAAAAATCTGTTTTCAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGCATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGATATTGAAACAGCAGAAGATTTAATTTTATAAAATTATTTTACCAACTGCTTCGAAAAAATAAAACGGTCAAAAGTGTTGATTTTACTGGTTTTCTATGTAACTTAAACTGAAAAAAATAAGTTGTTAAAATTGGTTGGTAAAAAATTAATGAAAGTGTTTATTTTCAATAGGTTTAGGGGTATAATAGAAACAAGGAATGGCTATTTTACTATC # Right flank : TGCTCTTGCTTTAATTTTTCCTCAGAAATATCTTTATTAAAGAAAGTCAACCATCTTTGAAGTCTATCTTCTTTTAAATTCTTTTCTTCTAGTTTGTTAAATTTAGGAACCTCTATAAAATGAATTTCAACTAAGTCCGTTAACATATAGTCTTTGTATTCATCTTCCCAAAGGTGAAACTCAGTGTGAAATTTATCTAAGTTTATATATTCAAAATCTAGTATGTTTATAGTTATTACCTTTTTAAAATTTCTATTATGCTTTTTTTATTATTAGAACTAATATCTTTAAAATGACTAGTACACTAATTAAAATAAATAAAAATTTTTAAAATGAAAATATAAAATCATCGTTTACCAATAATCAAGCTATATTTTGACAAGTACCTGTTACCCTAGTGAGAAGGTTTATCTAAGAACCTGTTGCTAAAATAAATTATCCATTGTTTTTAGATATGTGATGAGAACTTATATATCCTCCATTTTCACTTTTAGATAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //