Array 1 8286-10695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032329.1 Xenorhabdus nematophila strain YL001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8286 29 100.0 33 ............................. AATATAGAAAGATAATCATTGGCATCATTCAGG 8348 29 100.0 32 ............................. CGATTCGAGGCAGCCAAACAGTTGTTTGCCAG 8409 29 100.0 32 ............................. GCAGATAACATAGTACGTACGTCACGGCATAC 8470 29 100.0 32 ............................. GCTTTAATATCAAATATCGTTATGAATTTGAT 8531 29 100.0 32 ............................. GCGGCGGATTTGTTATCACGGCCTGGACACGA 8592 29 96.6 33 ............................A GGTGATTTCAGGACAATTTACCCGCGCGGTGAA 8654 29 100.0 32 ............................. GTGTCACGGATCTCTTGCGTGAGCACTTTAAT 8715 29 100.0 32 ............................. GCGCTATTCAGCACGATGTTGATGAGATGGGG 8776 29 100.0 32 ............................. AAAAATTGCAACCTCATAAATGATACTGGGGT 8837 29 100.0 32 ............................. CTAACGGAACCACAGAACACTTAATTAACGGG 8898 29 100.0 32 ............................. CCACTCTCACAATCTCTCTAACCTCACGGAAT 8959 29 100.0 32 ............................. CCACTCTCACAATCTCTCTAACCTCACGGAAT 9020 29 100.0 32 ............................. CCACCGAGCAGACAAAATATGGTTATCAGAGT 9081 29 100.0 32 ............................. ACTGTCACTGGGATAATCAATGGACAGATGTC 9142 29 100.0 32 ............................. ACAGAGGAACCAAAATGAATTTACCGCATTTA 9203 29 100.0 32 ............................. GGTAAAACAACGCGCACCGAATAAGGCGAACG 9264 29 100.0 32 ............................. CCACTTCCTCCGGCGGCGTGGGCGATGCAACC 9325 29 100.0 32 ............................. ATTTTTTTAATTGAAGCTGGCTTTAAAATTAG 9386 29 100.0 32 ............................. TCCATTTGTACAGCACTCGCATGGTTCAATAA 9447 29 100.0 32 ............................. CGCCGTATCACATTATTCACTATCTCATTAAT 9508 29 100.0 32 ............................. CCAGCGGGACCCCACGATTTACTCATTGACGA 9569 29 100.0 32 ............................. CGTTGGCTTTTGCTGGGCTGGGATCAGATCAG 9630 29 96.6 32 .................A........... TAATCGGGTTGGGCAATCTCCCGTACCCGATG 9691 29 100.0 32 ............................. CTATAGGAGGAAAACTTACTTTATTGGTAAAA 9752 29 100.0 32 ............................. TGATTGAGGCTCATTGGCGCTCATGGGCGGAT 9813 29 100.0 32 ............................. GCTGGTGGTAATTTTGGCGATGATAATAATCG 9874 29 100.0 32 ............................. CAAACTGAGTAAATCACCGAGCATATATTTTA 9935 29 100.0 32 ............................. GACTGGACAAAAATCTATGGGAATTTGTTAAT 9996 29 100.0 32 ............................. GAAAAATTCATTACAGACGGTGAATTAACGTT 10057 29 100.0 32 ............................. GCATTGTTATCCGGGAAATTCACCGTGTTGCC 10118 29 100.0 32 ............................. TGTACGCAATTGAACAAGATGGGTTGAAACGG 10179 29 96.6 32 ............................A AGAGGAGAAATCTCCTCTTTAGAATTATACGC 10240 29 96.6 32 ............................A ACATGGCACACATAAAGGCATCAATTGACACC 10301 29 100.0 32 ............................. ACTTTTATCAAGATCTTCTAATTGACCAAGTA 10362 29 100.0 32 ............................. CCGTCCATTTTCTGCATACACTGAATAAATGG 10423 29 100.0 32 ............................. TTTTTTCAAGTGGATTATCATCGTACTTATGG 10484 29 100.0 32 ............................. CATCATTCCAAATTCATGCAGAAAAGCATTCA 10545 29 100.0 32 ............................. GTATCGTGAATGTTCACTTTCGCTTGTACCAT 10606 29 100.0 32 ............................. CAAAAGAGCGGTTCGCCGATGCTATTATCAAT 10667 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : TATACTGAAAAGTATTTCAACGAATTGGAAAGAAGCTACTTTTATAAAAAAGAATAGAATGTATTCCAAAATATGCAAATTTTTATATAAATTTGTCTTCCGTGGAGTATTTTCCCCGTACCTACGGGGAACATGGAGTTATAATCAAGGAAATTTAAAGGAGCTATGGTTTATTCCCGTATTAACGGGAAACATATTCACATAATGAAGGAATGTGAATGTTCCAATCCTTTATCTTCTTCTTAAGAAAAGTATATATAGAATTGCTATCTTAGCCATATTTGACAGAAATAGTGATTCAGAGCGAGGTAAATCACTGTAGGTATGTCTCTGTTTATTACTCGCCACCTTTATACCTTCATTTATGTGATCATAAGTAACCTAATAATCAGTAGTAGGTAAAAAATAAAAGGAATAATTTAGCTGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAAATATCTTATAAAACAGATGGATAAAATTAGAG # Right flank : GGAACGCCTGAATATCGTCAGCGCAGGAGACTCGTGAAGCGATGATACCACGAAAAAAAGAAGTGACACGCCTTATATCGCCGCCCGCATTGGGCGACAGTTTTTGCTACAAAAAGAAAAAGCCCCGAGTTCAAAACTCGGGGCTTATAAATTCTGGCGGTGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCGCACCGCGTGGTGTTCTGGTTGAGAACGGGACGGATGATACGAGCTACAGTAAAATCCGTCAATCGCTTTTTATAACAAAATGGTTTGTTTGCGCAGTTTTTCGCCTCAATAATACATTTCCTTCCATTTTGTGACTATTTTGTTAGTGAATCTGTTCGGATTTCGGACGCCAAAGGCAACTTCCTCCTTTCTTCTCCACTAAGTCCAGGCGGGATTCATGCTGGGTTAATTCTTCATCAGATGCGTAAATCACTTTCAACCCAACCTGAGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1888635-1892676 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032329.1 Xenorhabdus nematophila strain YL001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 1888635 29 100.0 32 ............................. TCAGAGATGACTAGTTTTTTAAATGTATTGCA 1888696 29 100.0 32 ............................. ACGACGTAAAACAGGATTATGACGCCGGGTTT 1888757 29 100.0 32 ............................. CAGGAGCAAATCAAATGAGATATCTGACATTC 1888818 29 100.0 32 ............................. ACAGGACAATTACTTTTGCTACCGGCCTTGAA 1888879 29 100.0 32 ............................. CGGTTTCAGACACTGGACATTGGGCTTTGACA 1888940 29 100.0 32 ............................. GTTGCAAAACTCCTTGATTCTGCTTTGGAAGG 1889001 29 100.0 32 ............................. AAACGTATTAACGCAATAGTTAATATCTCTTC 1889062 29 100.0 32 ............................. AATAAGAGAGCCGTCAATTTCGTTTGGTTTAT 1889123 29 100.0 32 ............................. TTCTCTCATTCTGGATTTAACCAGTTCATACC 1889184 29 100.0 32 ............................. GAAGGCATCATTCCAATAACGCACGATGATCA 1889245 29 96.6 32 ............................T GATTAAATAATATTTTAAAATCGTGAATAACT 1889306 29 100.0 32 ............................. CGTTCGGAATTTTACTCAGCTACTACGCTCAT 1889367 29 100.0 32 ............................. CAAATTTGTTTGGTGCTGCCCTGTTTCATTAA 1889428 29 100.0 32 ............................. TTAGTTTACAAATTTGTGGGCTGTTCCACTAA 1889489 29 100.0 32 ............................. GTCTGTAACCGCCTAAATCCACTTTTTCGGTG 1889550 29 100.0 32 ............................. TGTTTCTTAGGTGGTCTTATCAGAATCCCATA 1889611 29 100.0 32 ............................. ACATTAATCAGGCGACGGGAAAGAAATCGATG 1889672 29 100.0 32 ............................. ATAATTTGACTGCGAAAGTGTTTGTGATGCCA 1889733 29 100.0 32 ............................. AAACTGGATGATAGATATGGTGAGTCATGGGA 1889794 29 100.0 32 ............................. GCCCCGGTAAAATTCATTTTAATTGCCGCTCA 1889855 29 100.0 32 ............................. CATTGAGCTAGCTGCTGGAGTTGGCTGTTGCA 1889916 29 100.0 32 ............................. CGATAGATGAGTTTGATTTTAGTGTTGCTACT 1889977 29 100.0 32 ............................. AGATTACCAATCTTTATTGTAGGTTTCATATA 1890038 29 100.0 32 ............................. GTGTATGGCTGCTTTCAACATCAAAGGCCAGA 1890099 29 100.0 32 ............................. ATGGCGCTAATTACACTATTCCCATACGTACA 1890160 29 100.0 32 ............................. TGAACTGATTGGCCTGTCCTATGATACCTATA 1890221 29 100.0 32 ............................. TTAACTTAAATTAATATCCATCGAACAGGCAG 1890282 29 100.0 32 ............................. GATAGACACAGAGTCGCTGGAATGTTTGCGCA 1890343 29 96.6 32 ............................A ATGAATGCCGCTTTAACGGCCAAATTAAAAAC 1890404 29 96.6 32 ............................A TTTAGAAATGGCGTAAACCCGCCAGAGCAGGC 1890465 29 100.0 32 ............................. CCTTGTTAGCACCACGAACGACATAGACTGTA 1890526 29 100.0 32 ............................. ATTACTAATCAAACAGACGGGACGAGTTTTAT 1890587 29 100.0 32 ............................. TCTACACGATGAATGCAGGTAATTTGACTATT 1890648 29 100.0 33 ............................. AAATATTGCAGCGGGCTGAATGGGATAGAAAAC 1890710 29 100.0 32 ............................. GTGTTGCTCAGACGTTGGGTGTCGATCCTCAT 1890771 29 100.0 32 ............................. ACATACTCCCCCTCTTTTTGGTGAAATTCTCG 1890832 29 100.0 32 ............................. ATGGGAAACATTCCCCTTTATCATTAGCATTG 1890893 29 100.0 32 ............................. GTCTCATCCCTGCCCACTCATGGGGGTGTTAT 1890954 29 100.0 32 ............................. TGTTTACTACAAAGTCTTATACCCCGTGGATG 1891015 29 100.0 32 ............................. TAATTTGCCGTAAAACAATGTCCGACTGTTGG 1891076 29 100.0 32 ............................. TAACTTTCCTCCTGGCTTTCTGTATAGGCATT 1891137 29 100.0 32 ............................. GAAATTCGCTCTTTAACATTACCGGAACAGAT 1891198 29 96.6 33 ............................A GGTCACCCGGTATTTTCTGCCCTGATAAATCAC 1891260 29 96.6 32 ............................A AGGTGAGAATGCAGAGCGGTTAATTCAGGCTC 1891321 29 96.6 32 ............................A GTGGCTGACCTTTCAAATGGATATACGAAGGT 1891382 29 96.6 33 ............................A GAAACGCTTAGCTTCTTCTGCCGGCAACCTATC 1891444 29 100.0 33 ............................. GATAATTGATAGACTCAATAAAAAAATGTCTAA 1891506 29 100.0 32 ............................. TGATTAGTGATGGCTGGGTTTCAAATACGTTT 1891567 29 100.0 32 ............................. CCTATATGCGCCCATACATTATTCAGGCCATC 1891628 29 100.0 33 ............................. CAACTTTATGGGGTAAACACATGGTCAACGGTC 1891690 29 100.0 32 ............................. GCCGCCTCAGCGACCTCCGATAATTTGGTGGA 1891751 29 100.0 32 ............................. ACATCATTGCCTTTCAGCCCCCACTCTTTAGC 1891812 29 100.0 32 ............................. TTTTCTGACAGCGCATTAATAGCACTGGTGGC 1891873 29 100.0 32 ............................. TTTGCCCTCTTTTTTCTGACCCCCATCTCTCA 1891934 29 100.0 32 ............................. CCGTTCATTGATCCGGCGTTTGAGTCCAGGGT 1891995 29 100.0 32 ............................. ACATAGAACGAATTGATTCAATGATCGCAATA 1892056 29 100.0 32 ............................. GCGCCAGCGGTTTTCCATCCGGTCCTAATATT 1892117 29 100.0 33 ............................. CCTCCTGTGGCCCCCAATGATAAAAATACGTGA 1892179 29 100.0 32 ............................. CGAGCCGTAGAAACGTATGACCAAAAACCGGA 1892240 29 100.0 32 ............................. CATGGGTCAGTTTAAATGGGGACGTGATATGT 1892301 29 100.0 32 ............................. GCAGAGCATAATGAAATTTCACAATTAATTGT 1892362 29 96.6 33 ............................A GAAAAAGCCCGGATAGGTGTGGCCAACAGAGCA 1892424 29 82.8 134 .................A...CG.G.G.. TGAACGTTTTTTAAGCTTGAATTGTATGTTATGAAATCACATATCGGGCAAAAATACCTCAGAATGGTCTTGTTAAGGCATTGCTTAGTATTTTATTTGCTCTATTTGATCAAAAATAAGCCTTTCATGCTCTC C [1892440] 1892588 28 82.8 32 ACC..-G...................... CTTACGGCGGTATTGCCAGCGGGGCGCAGATT 1892648 29 86.2 0 .............A.....A..C....T. | ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 65 29 98.8 34 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : AATAGCCAGTGGCCGTTTACTGCCATCCTCTTTCGGGATCTGCGTGATTCTGGCGGCTTTCGGACGATACGTCCCTCTGCGTATTCGCAGGATAAGATTGTGAATATTCCCATCAAGATGTTCACCGTAAGCGGCTTTTGTCATGCGATCAATACCTACCGCTTTATTCCCGTCAAGCCGCAGGAACTGTCCTTTCAACATGTCGCTGTTCAGCAAATGCCCTAAGTTATTGAACACCTGCTGTTTGTTATCTGCTGATTTCTTGCTTATATGAAAGCGTTCTCATTTTGGTTAAGGCTAACAGGTTATTTTGCGATTGCTGCGATAGGTGTCTTAGAATTTGATAAGCCAAAATGAAAAATATGAGTGAAATGCGATCTGCATTGCAGATAGTGATTCAGGAAAAATAAAAGAGATAATTTAACGGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAATTATCTTATAAAACAGATGGATAAAATTAGA # Right flank : GCCACGCTGCATCTTGAAATCCATTGGATATAGAACTTTTTACCATATTTGAGGAAGATCGCAAAAATTACTCGTAATGTAGTTTAACTCCAAACTTCCTCATACAAGTTTGGGGCTAAACATTCAGGCTGTTAAAACAGAAAAAATAAAAACTACCCACGATAATACAATATTTAATAGCTTATTTATTTTAGCTAATCTGAACATTAAGGTGAAATATGATGATGGAAATACAATAATCATAAAACAAAAATACATCAAACTCATGTTTCTAAATAGCTGTTCCTAATATTGCTACACTTTTGCTGTGCCATGTTTATTTCCTGGGAATGGGCTAACCGTGTTCATAAAGCCACGCACTTTTCTCAATAACTGCCACATATAACAGCAACAATGATTACGTGTAATCGTTTCATGGAGTGCTAACCATAATTTTTCAATATGATTTATCCATGGGGAATAAATCGGTTGATAAATCAATTTGAATTTCGGATTTTCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4273896-4272828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032329.1 Xenorhabdus nematophila strain YL001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4273895 29 100.0 32 ............................. CGTAATGCTTTTTTCAGCTACCGTTTTAACGC 4273834 29 100.0 32 ............................. ACAGTGAGATAACGCCCATCTTCATATTTCAG 4273773 29 100.0 32 ............................. CATCCATTTCAGTTTGATAAACAAAGAGTTTA 4273712 29 100.0 32 ............................. GTTGTTCGCCGTTCTCGTGCCGGATGATGGAC 4273651 29 100.0 32 ............................. TAATACTCCAGCTCTTTAGTATTCCCGCGCGA 4273590 29 100.0 32 ............................. CCCTCGCGGGAGGGCTGTAAATAGATGTTTAA 4273529 29 100.0 33 ............................. AGTCGCTGACACAACAAAATTACACGTCATTGC 4273467 29 100.0 33 ............................. AACCACCTATCCAGACGATGACTATCCCTATGC 4273405 29 96.6 32 ............................C TGACGGGCACCACGTTCACTTTTTGCAGGAAC 4273344 29 100.0 32 ............................. AAAATGTATGGGAATTGGCTTATGTTTTATTA 4273283 29 100.0 32 ............................. CCCGATTGTCATTCCTGCAACAGCATCCCTTA 4273222 29 100.0 32 ............................. TACAAAACAGCGTCATGGGGTGAAGTAAAAGC 4273161 29 100.0 32 ............................. TTCTTTCAGGCATTCCCTCGCCACCTGTCTCC 4273100 29 100.0 32 ............................. ATAACCGGATGCCATCCCCCCGCCACCTCTGG 4273039 29 93.1 32 ............CC............... AACGCTTCACATTGACGGAAATCAGATATTGC 4272978 29 93.1 32 ............CC............... GGCTGTAGGTAAAATCACCGACCACCATGATC 4272917 29 93.1 32 ............CC............... GATATTATCGACGCAGCGAATGATTTAACCGA 4272856 29 93.1 0 ...........G.A............... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GAGGTCTCCGTAGGTACGGAGATAAACCG # Left flank : CCTGATTGAAGAAATCCTTGCCGCCGGCGAAATCTCACCGCCACCACCGCCTGCTGATGCCCAACCGCCTGCCATTCCCGAACCTATATCCATCGGTGATATAGGTCACAGGAGCCAGTAAAAATGAGTATGACGGTTGTTGTGACAGAAGCTGTTCCGCCCCGGTTGCGGGGACGTTTGGCCATTTGGTTACTGGAGATACGCGCCGGGGTTTATGTCGGGGATATCTCGCATAAAATCAGGGAGATGATTTGGGAACAAATCACAGAACAGACCGAAGATGGCAATGCAGTTATGGCCTGGAAAACCAACACTGAATCAGGCTTTGATTTCCAGACCTTTGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTTCGTTTAGTGAAGTTTAAACCACTTGCTGAGGAGTAGCTTAGAGAGATTAAAAACTACTTAAAGTCGGTAGAATTTATACCGGCAATAAAGAAGATTAAAAACAATTGGTTATATTTAGG # Right flank : TGGTTTATGACACAACAAGATGAAGAAGATATGATTCCCCCGTAAATACGGGGAAATCCCCCTCAACTTGTCACACAAAAAAGCATAAGCATAAGCATAAGCATAATTACTTATTTGAAAAGATAACCGAAATAACATAAAAATCACCAAAAAGTATTTTGGTAGTCATTTATTTTGATTTAGTCAATATAAAGACAAAAATAAAAATTCATCTGAGCTAAATTTATTTTTTACAATCAGAATATATCGAGATAAAAAGTAACATCAAAATAATGACAGTATAAAATGGTGATATTTATTAACATATAAGGAAAATAAAACGCATTTTTTTGATGATAAAACCAACGAAAACTCTAAATTTTGCCACAAACGCTTCCCAAGCATCATTCGTTAATGATTGTCAAAAATACCTATGCTAACCTACGCCGCTTTTCATCCCCCTTGCTGTTGATTTTATAAGCAATTATCTGTCGGAAATAGGAAGCGAATTAACTTATGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGTCTCCGTAGGTACGGAGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGGTCTCCGTAGGTACGGAGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4283900-4286309 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032329.1 Xenorhabdus nematophila strain YL001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4283900 29 100.0 33 ............................. AATATAGAAAGATAATCATTGGCATCATTCAGG 4283962 29 100.0 32 ............................. CGATTCGAGGCAGCCAAACAGTTGTTTGCCAG 4284023 29 100.0 32 ............................. GCAGATAACATAGTACGTACGTCACGGCATAC 4284084 29 100.0 32 ............................. GCTTTAATATCAAATATCGTTATGAATTTGAT 4284145 29 100.0 32 ............................. GCGGCGGATTTGTTATCACGGCCTGGACACGA 4284206 29 96.6 33 ............................A GGTGATTTCAGGACAATTTACCCGCGCGGTGAA 4284268 29 100.0 32 ............................. GTGTCACGGATCTCTTGCGTGAGCACTTTAAT 4284329 29 100.0 32 ............................. GCGCTATTCAGCACGATGTTGATGAGATGGGG 4284390 29 100.0 32 ............................. AAAAATTGCAACCTCATAAATGATACTGGGGT 4284451 29 100.0 32 ............................. CTAACGGAACCACAGAACACTTAATTAACGGG 4284512 29 100.0 32 ............................. CCACTCTCACAATCTCTCTAACCTCACGGAAT 4284573 29 100.0 32 ............................. CCACTCTCACAATCTCTCTAACCTCACGGAAT 4284634 29 100.0 32 ............................. CCACCGAGCAGACAAAATATGGTTATCAGAGT 4284695 29 100.0 32 ............................. ACTGTCACTGGGATAATCAATGGACAGATGTC 4284756 29 100.0 32 ............................. ACAGAGGAACCAAAATGAATTTACCGCATTTA 4284817 29 100.0 32 ............................. GGTAAAACAACGCGCACCGAATAAGGCGAACG 4284878 29 100.0 32 ............................. CCACTTCCTCCGGCGGCGTGGGCGATGCAACC 4284939 29 100.0 32 ............................. ATTTTTTTAATTGAAGCTGGCTTTAAAATTAG 4285000 29 100.0 32 ............................. TCCATTTGTACAGCACTCGCATGGTTCAATAA 4285061 29 100.0 32 ............................. CGCCGTATCACATTATTCACTATCTCATTAAT 4285122 29 100.0 32 ............................. CCAGCGGGACCCCACGATTTACTCATTGACGA 4285183 29 100.0 32 ............................. CGTTGGCTTTTGCTGGGCTGGGATCAGATCAG 4285244 29 96.6 32 .................A........... TAATCGGGTTGGGCAATCTCCCGTACCCGATG 4285305 29 100.0 32 ............................. CTATAGGAGGAAAACTTACTTTATTGGTAAAA 4285366 29 100.0 32 ............................. TGATTGAGGCTCATTGGCGCTCATGGGCGGAT 4285427 29 100.0 32 ............................. GCTGGTGGTAATTTTGGCGATGATAATAATCG 4285488 29 100.0 32 ............................. CAAACTGAGTAAATCACCGAGCATATATTTTA 4285549 29 100.0 32 ............................. GACTGGACAAAAATCTATGGGAATTTGTTAAT 4285610 29 100.0 32 ............................. GAAAAATTCATTACAGACGGTGAATTAACGTT 4285671 29 100.0 32 ............................. GCATTGTTATCCGGGAAATTCACCGTGTTGCC 4285732 29 100.0 32 ............................. TGTACGCAATTGAACAAGATGGGTTGAAACGG 4285793 29 96.6 32 ............................A AGAGGAGAAATCTCCTCTTTAGAATTATACGC 4285854 29 96.6 32 ............................A ACATGGCACACATAAAGGCATCAATTGACACC 4285915 29 100.0 32 ............................. ACTTTTATCAAGATCTTCTAATTGACCAAGTA 4285976 29 100.0 32 ............................. CCGTCCATTTTCTGCATACACTGAATAAATGG 4286037 29 100.0 32 ............................. TTTTTTCAAGTGGATTATCATCGTACTTATGG 4286098 29 100.0 32 ............................. CATCATTCCAAATTCATGCAGAAAAGCATTCA 4286159 29 100.0 32 ............................. GTATCGTGAATGTTCACTTTCGCTTGTACCAT 4286220 29 100.0 32 ............................. CAAAAGAGCGGTTCGCCGATGCTATTATCAAT 4286281 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : TATACTGAAAAGTATTTCAACGAATTGGAAAGAAGCTACTTTTATAAAAAAGAATAGAATGTATTCCAAAATATGCAAATTTTTATATAAATTTGTCTTCCGTGGAGTATTTTCCCCGTACCTACGGGGAACATGGAGTTATAATCAAGGAAATTTAAAGGAGCTATGGTTTATTCCCGTATTAACGGGAAACATATTCACATAATGAAGGAATGTGAATGTTCCAATCCTTTATCTTCTTCTTAAGAAAAGTATATATAGAATTGCTATCTTAGCCATATTTGACAGAAATAGTGATTCAGAGCGAGGTAAATCACTGTAGGTATGTCTCTGTTTATTACTCGCCACCTTTATACCTTCATTTATGTGATCATAAGTAACCTAATAATCAGTAGTAGGTAAAAAATAAAAGGAATAATTTAGCTGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAAATATCTTATAAAACAGATGGATAAAATTAGAG # Right flank : GGAACGCCTGAATATCGTCAGCGCAGGAGACTCGTGAAGCGATGATACCACGAAAAAAAGAAGTGACACGCCTTATATCGCCGCCCGCATTGGGCGACAGTTTTTGCTACAAAAAGAAAAAGCCCCGAGTTCAAAACTCGGGGCTTATAAATTCTGGCGGTGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCGCACCGCGTGGTGTTCTGGTTGAGAACGGGACGGATGATACGAGCTACAGTAAAATCCGTCAATCGCTTTTTATAACAAAATGGTTTGTTTGCGCAGTTTTTCGCCTCAATAATACATTTCCTTCCATTTTGTGACTATTTTGTTAGTGAATCTGTTCGGATTTCGGACGCCAAAGGCAACTTCCTCCTTTCTTCTCCACTAAGTCCAGGCGGGATTCATGCTGGGTTAATTCTTCATCAGATGCGTAAATCACTTTCAACCCAACCTGAGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //