Array 1 30793-32262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMG010000009.1 Providencia rettgeri strain 2020EL-00105 NODE_9_length_41573_cov_30.031607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30793 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 30854 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 30915 28 100.0 32 ............................ ATGTATTCCGCTGAACCTCCCCAAGCTTCACA 30975 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 31035 28 100.0 32 ............................ TTGGGCTGCAAAGAAAGCGGAATCAATGCTCC 31095 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 31155 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 31215 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 31275 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 31335 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 31395 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 31455 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 31515 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 31575 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 31635 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 31695 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 31755 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 31815 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 31875 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 31935 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 31995 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 32055 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 32115 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 32175 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 32235 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.6 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40900-41407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMG010000009.1 Providencia rettgeri strain 2020EL-00105 NODE_9_length_41573_cov_30.031607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40900 28 100.0 32 ............................ TTGGGTCACTAAATCAATCGGTAACATCATCA 40960 28 100.0 32 ............................ TTGGGTCACTAAATCAATCGGTAACATCATCA 41020 28 100.0 32 ............................ TCATCGGGCTCAACAATACGGCCATCAAATGG 41080 28 100.0 32 ............................ AATGCAAAGATGACCACGGGTTTAAATATTTC 41140 28 100.0 32 ............................ ATGAATTAATGGTGGGGTATGTCTTACTTAAA 41200 28 100.0 32 ............................ TCAATGTTTAATAGGTCGTCTTTTTCTTGATA 41260 28 100.0 32 ............................ TAATGAGTCTACCCAAACTTGGATTCGTTGTT 41320 28 100.0 32 ............................ ATAACAGCAACTGAATATTTCGACGCAAAACC 41380 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGGTAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : TCAGGTGGGTTAAATCTCAACCTTGCTGCTTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //