Array 1 126268-127639 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000002.1 Nocardiopsis litoralis strain KCTC 19473 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126268 29 100.0 32 ............................. GAGCAATCCTCTACTACGAGGCCGTCTACCCC 126329 29 100.0 33 ............................. GGCCATCCCCCGTGTCCGCCTGCGGGAGGCGGG 126391 29 100.0 32 ............................. CGCCCGGGGCGCCCGCAGCTGGTCGACTACCT 126452 29 100.0 32 ............................. AGCTCGCGGGAGCCTTCGGCACGGTCGCCGAC 126513 29 100.0 32 ............................. TCCATAATCGTGACCGCGAAACCCGCGATGCA 126574 29 100.0 32 ............................. AGGATCGGGGGCATGTCGAGCTTGCGGGCGAC 126635 29 100.0 32 ............................. GTATGAAAAAAGTGGGGACCGGCTTCCCGCCG 126696 29 100.0 32 ............................. GCGTCGTGGCCGCGAAGGAAGGAGACCTGGAG 126757 29 100.0 32 ............................. CAGCTCACCCCGAGTGGGAGATCCACCGAGAA 126818 29 100.0 32 ............................. GGGTTCGTGCGCGGCGGCCGTGTGGCCATGGT 126879 29 100.0 32 ............................. CTCGACAGCGGCGTAGTAGCCGTGGGACTCCA 126940 29 100.0 32 ............................. TTTTGCGTCGTGCGGAATGACCGTGATCGGCC 127001 29 100.0 32 ............................. GGCGAGGAGTCGGCCCTGTGGCGCGGCAAGGT 127062 29 100.0 32 ............................. CTGGCGGCCGAGGGGTCGACGTAGACGCGTTC 127123 29 100.0 32 ............................. TGCGTCGGTCACGGCCGGGTCCTCGTTGGAGG 127184 29 100.0 32 ............................. AGGTGGACACCCCCACCGACCAGGGGCTCTAC 127245 29 100.0 32 ............................. CAGACCACGTGACCGACGACGCCCATGCCTCC 127306 29 100.0 32 ............................. AGAAAGAGGGCCGGACGCTCACATCCGACCCT 127367 29 100.0 32 ............................. GGCGACGGGTTCCCGATCGGGCAGGCTGCGGC 127428 29 100.0 32 ............................. GGCATCGGCTACCTGGCCGGGGTCGAGGACGA 127489 29 96.6 32 ...................A......... CCGGTGACCTACGACGAGAAGGGTGCCCCCAC 127550 29 96.6 31 ....A........................ GCCCGCGCGAGGCAGGGGAACCGGCGCGCGG 127610 29 89.7 0 ..............C.........A...T | G [127636] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GCAGGCCCCACGCATGTGGGGATGGACCG # Left flank : CCGTGCCCAGGCCGAGCAGGAGGCCGGCGGTCAGATTCCGGCCGTGGCGTGTCCCCGGGTCCGTTCGTGATGGTGTGGACATCGGCTTCCCCCTGACTCCGTACCCGGTCCTCGCCGGGCCTTGCGCGTGTGACTGCCCCCGGGCCCAGTTTCTCGCTCCGGCCGTAAGGAGCGGTGGGGGAGGCTGGTCAAGCAGCGGGGGCAGCAGGAGCGTCTGGGCCAAGCACCAGTGGAGGCCGCTACAGTGACAAGGAAGTTGCTGCTTTGGGCTCTGTACGGGGCTGAAGCCAGCCTCAGAGCGGCTTATCCCTCAAGGAGGGACGGGGTTCAGCAGGGTATTGGAGAGGTCCAGGTGGTTGGGCGGCTGTGAGTTGTCATGCCAGGGGCCAGCCCAGAGCTAACCACTTCAGTGTGTGATGTCCTCGTTACAGGTTTGTTCTGAGTGTCATGAATTCTTATTGCAAAACAGTAACGCCCGGAGTTTTAGCAGGTCGCGAAGT # Right flank : TTCCTGCTGCTCTACGTGTAGTCCTCGAGGAATGCCAGGCTGCTGTTTCCAGCCGATTTTCGTGATTCCTCAGCGAATGTCCGAGGCCGACCATATGGTTCTGCTTCAGAGGCTTACATCGCATCAAGGAGGCCCGCGGTGAGCATGGGAACCCCCCACGGACACGATGGCCCCCTCGGGCTCCTGGATCTGAGCTTGTGGGGCAAGTCTGAGGGTTTGCCGCCAAATGTCCGCTATCCGCTCACTTGTCACCTTCTGGACGTTGGGGCGGTGGCGGAGGTGCTCTGGCGGGACCATGTGGCATCCGGTGTCAGGCAGACGATCGCCGACGGGTTGGAAACCACGATCGAGCATGCGGGGCGGTTGATCCCGTATTGGGCTTCTCTCCACGACATCGGGAAAATCACCCACGGTTTCCAAGCCAAGGATGTCGCTGCACCGCTACACCGGTATCCGGATTCGGGGCCCGGCAAGAACCACGGCCAAGTGGCGGGGGAGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGGCCCCACGCATGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 136916-139445 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000002.1 Nocardiopsis litoralis strain KCTC 19473 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136916 29 100.0 32 ............................. TTTTGGAGCTTTTCACGGAGGGCCGTGACAAC 136977 29 100.0 32 ............................. GAATGTTCTCGCAGGTCATGCAGGGTACGGAG 137038 29 100.0 32 ............................. CGGGCGCCCTTGGTCTCGCCCTCAGCGGCCAC 137099 29 100.0 32 ............................. CCGACCCGGTCGCCCCGGTCGACGGGGGGTGC 137160 29 100.0 32 ............................. GACGTATTGACGTCATGACGTACACACGTCAC 137221 29 100.0 32 ............................. GCCACGAGCAGCTACCCGAGGGCGCGGGCCAC 137282 29 100.0 32 ............................. CCCTGACCCACCACCGCGGCGAACAGGCCGAC 137343 29 100.0 32 ............................. GGCGGCCCGGTGTGGTGCTGGGCGACCTCAAC 137404 29 100.0 32 ............................. TGCCATCGCGGGGTTACATACGCGGTAGATCG 137465 29 100.0 32 ............................. GCGCGGGGGTGCAGGTCGCCCCCGCTGCCACC 137526 29 100.0 32 ............................. TCCATCTCGGTCCTGCACGCGGCCTTCCAAGC 137587 29 100.0 32 ............................. CAGGAGGCGCGCGAGTTGGCCGAGCTGGCCAC 137648 29 100.0 32 ............................. ACGACTACGGCCACCACGATCGCTGCGTACTT 137709 29 100.0 32 ............................. GGCACGAGCACCAGGTCGGCGGCGTCCATGGC 137770 29 96.6 32 ............................C AGCCACCAGGACCAGTCAGTCAGTACATCCCC 137831 29 100.0 32 ............................. CTGTCAGAGGCGGTGTCAGGAGCTCCTGACAC 137892 29 100.0 32 ............................. ACGACGGCAGCGTGGCGCCAGGGCACCACGAA 137953 29 100.0 32 ............................. AACGAGGAGGCCTGACGTGTACGGCTTCCTCG 138014 29 100.0 32 ............................. TGGCGATGGTGCGTCAGTGACGGGCTCACTTA 138075 29 100.0 32 ............................. GGTGACCACACCTCGGCGGTCGTCCTGGGCCT 138136 29 100.0 32 ............................. ACCACCCTCGCCCTGACCGGCCCCGACGGGCA 138197 29 100.0 32 ............................. CCCGAGGACATCACCGCCGCGATCCTCGCCGG 138258 29 100.0 32 ............................. CGCAGAATCTCCTCGCTGAAGAGCAGGACGTC 138319 29 100.0 32 ............................. CGCAGAATCTCCTCGCTGAAGAGCAGGACGTC 138380 29 100.0 32 ............................. GCGCGCCTGGTCGTGCCGGACAGTTTCCTGGA 138441 29 100.0 32 ............................. TTCTTCTTGTACTGGGCGTCGCGGCGCTTCTG 138502 29 100.0 33 ............................. CGTTGCTGTGGCACCTCGATCGGCGTCATCATC 138564 29 100.0 32 ............................. CGCCCGATGAGCCGGATGGAGCACGTCGAGGC 138625 29 100.0 32 ............................. GACACCTTTTCGTTGTGGTTACCGCCGGACTC 138686 29 100.0 32 ............................. GCGCGCCTGGTCGTGCCGGACAGTTTCCTGGA 138747 29 100.0 32 ............................. TCAGCACGTAACGAAGGCCCCAGGCATACCGC 138808 29 100.0 32 ............................. GCGCTGCTGGATGCCTACGAGGCGCTGCTGCC 138869 29 100.0 31 ............................. GTCGAGGGCATCCCCATGAGCGCCCCCTACA 138929 29 100.0 32 ............................. GTCATGGACACCGGTCAGGACGTGCACCTGGT 138990 29 100.0 32 ............................. GGAAATCAGGTTGAGGACGTTGCCCCCGACCA 139051 29 100.0 32 ............................. CTTCATATGCCCTCTGAGCTAGGAGTATCTAA 139112 29 100.0 32 ............................. GCTCTGCCCGGCTCGACACTGGCGCAGATCAC 139173 29 100.0 32 ............................. ACTGCGACCTTGCGGGTTCCATGGGGCCTGGC 139234 29 100.0 32 ............................. CGCGGCTACATCCGCGGGGACCTGGACCGAGT 139295 29 100.0 32 ............................. TCGCTGCCCCAGTCGGCGGACCAGGCGTTGTC 139356 29 100.0 32 ............................. TACGACGGGCGGCGCGGATACATCGCCACGTC 139417 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.8 32 GCAGGCCCCACGCACGTGGGGATGGACCG # Left flank : GGAGTTGGGAAGCGTCAGCGGTGGGATCAACTACGGCGACGAGGTGACCTAAGGAGGCTCGTGTGGCGAACTTGGTGGTCATCACTACAGCGGCTGTGCCCGATCACGTTCGAGGAGCACTCACACGGTGGATGATCGAGCCCAAGGCGGGATGCTATGTGGGCACACTCTCGGCGCGGGTGCGCGAGGAGCTCTGGGCGGTGGTCAGCGCGTCCCTGGGTGAGGGTTCGGCCGTCTGTATCCACCCCTCGGACAACGAGCAACGGTTCCTGGTCAGGACCGCCGGCCCTCAACGTCGGGAAGTCGTGGACTACGAAGGGCTGCAACTGATCCAGATGAACCCCCAGGAGTTGGCCGAGCCCGACGTGGGCGCAATGCGCGCGGATCTGTAGACCAGGGTTGTGTCACTTTCAGTGATTGAACAAGTACAAGTAAGCGTGGGGGCGGATGATTTTTGATTAAGAAACGGTAACGCTGTACGTTTTGGCAGGTCATTAAGT # Right flank : CCTGGGCCAACCATTTGCGCCACTGTTCAGGGGTGTCCGTGGCGAGACCCGCAGCATCGGGCGTGGGTGGGAAGTGGGAACTGGTCGCGCGCACGAGGACAGGGCCGAGAGTCGTCCATCCGGGGTGGTGCATGAGCGGGCTCCGAGGGGGTTGGGGCGCCGCACCCGGGCTGAGGGTGCGGCGCCGGACGAACGCCGTCTGTTTAGTCAGCGGCGCTGGTACAGCACGCGCCCTCGCACGTGTTACCGCAGTTGTCCTCGGTCAGGTCGATCGCGGTGTCGAACGCATCAGCGTCCTCGATCAGCGTCATGTCCAGTTCGAAGGGCATGGACGTCTCCTTTCTTGTTGGGCGCGGCACGGGATGTGCCACACCGGTCTTGGGTTCCGGTCCGGTTCACCCCGGGTGTTCGGATGGGCGCGGCTGGGGCGGGGAGCCGGGGTGCTCGCCGCTGGTCACTGCTGCTCCAGCAGTTCCAGGCGGGCGCGGACCCGGGTGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 97875-97174 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000017.1 Nocardiopsis litoralis strain KCTC 19473 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 97874 30 96.7 31 .............................G TGCTGCTGCCCTTCGCCGCCGTGGCCGAGAA 97813 30 96.7 31 .............................T GCTTGACGAACTTCTGCACGCCTTCGGTCAG 97752 30 96.7 31 ............................T. GTCAGGGTCGTGCGGGTCAGGCTCCACAGGC 97691 30 100.0 31 .............................. GAAGGGCTGCTACTACTGTGGCGCCCCCCTC 97630 30 100.0 31 .............................. GCCTCGTGTTCGTGCTTGAGTTTCGCCGCGA 97569 30 100.0 31 .............................. GCGGCCGCCTGTTCGCCGGCACCCGGGAAGA 97508 30 96.7 31 .............................A AGGGGCGGCGCTGATCTGACCATCGGCGTGC 97447 30 100.0 31 .............................. TCGTAGAGCGGGTGGAGTTCGTGGAGATGCA 97386 30 96.7 31 .............................G AGATGCGGGGGTCATCGGGGACGTGGGGTTC 97325 30 100.0 31 .............................. CCAAGATCCTCGCCGTCTACTCCGGCAAGGG 97264 30 100.0 31 .............................. AGTCTCAGGAGGCGGTGACATGATCGGCCTG 97203 30 90.0 0 .........................G.A.A | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.8 31 CTGCGCCCCACGCACGTGGGGATGGACCGC # Left flank : GCCGCT # Right flank : CGCTCAACCGGATCGAGACGGTCGCCGGTCTCCGGCGAGCCGGCGCGTGCACACACGCCCAGCTCGGAGGGTTCCGTCGAGGAGGCCTCACGGCGGGGCCTCAGGAGAGCTCCGCGTCTCCCGAGGCCCCCACCGGGTCCTCAGGAGTCCAGGAGGGACTGCAGGAGCTCACCGAACTCGTCGTCGTCGGTGAACAGCGAGGCCGAACCCTGCTCCTGGTCGATCTCGATCCGTACGGCACGCAGGTCGGGCAGATCGGACTCGGCGCGCTCCCGGGAAGAGGGGTGCCACCAGTACACCTGAGAGGTGATGGGCCTCTCACCCTCCTCGACGAAGCGACCGGCCATGTTCTGGAGGAGCTCGAGTGCCGCTACGGGGTGGCTGCTCTCCTCCCCGAGGACATGGGCCAGAACCACCTGAGGGACCGGCAGCGCCACGAGCACACCGTGCGGGGTGTGCTCCAAGTGCTTGCTCAGGACATGCAGCTGGGCGGACACGTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCGCCCCACGCACGTGGGGATGGACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23340-23960 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000030.1 Nocardiopsis litoralis strain KCTC 19473 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 23340 37 100.0 34 ..................................... ATCAGGTCCGCGATCGTGACCGCGAACCCGGCGA 23411 37 100.0 36 ..................................... GAGGTGATCGTGGATCATCAGCAACCCGACCGTGTC 23484 37 100.0 38 ..................................... ACCCGGGATGGTTATCGGCGTCGAGGGCCGCTGTGGCT 23559 37 100.0 36 ..................................... CTCGGCGCCCTGGGCCATCTGGGCCCGGACCTCTTC 23632 37 100.0 37 ..................................... ATCGACGGCGCCGGTGACCAGCACCAGACCGTCGCGG 23706 37 94.6 36 ...............G...G................. GCCGACGGCGGCCGCACGGTGGGCCGGCTGGTCGGG 23779 37 91.9 36 ...............G...G...............A. GTCAAACACTTCGGCGGGGGCATGGCGGAAGAAGCC 23852 37 94.6 35 ...............G...G................. TTTATCCGCAACTTCGTCGCGATCTTCGCTGAGAC 23924 37 86.5 0 ..........T...GCG.....T.............. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.4 36 GTCTCAACGGCTCCAAAGGAGCCGTCCACGTTGAAGG # Left flank : GGGCGGAGATGGGGGTGTCGGCCAAGCGGCGTTGGTAGCGGCTGTGGACGCGGGCGGAGGGCGTCGCGCACGTGGGGCAGGTAGCGGTGCGGGTAGTCGTGCTGGCGATGATGCGTACTGTCCGGCCGCTGCGGTGGGCATCGGCGATGCGGAGCCCGGTCAGGTGGGGGAAGAACAGGCTGAAGAGGGAGGAGAGGGACACCTGGCATCATCGCGAGTAGAGCCCTGTCGGGGCAGGCGCTTCATCAAATCCGTGCCAGAACCAGTATTCACGTGTCGTCGACAGGCCCGGCCCCGGGCGATGTGCGTCCCCTGCGCGGCTGTCGGATTGGGCGAGTAGCCTGCGTAGTGATTGATCGTGGGGTGTGCTTGGGAACCGGAAGTGGTCATGGGAGTCCGGGTGTGTTCCCAAGTAAGCTTGGCCGGTTTTGTGGATTGGTGTCTGACTTGGTTTCCGGCGCAGAGTGTGTAGTGGGAGACGTTTTCCCATATCAGGCGCC # Right flank : GATGTAGAGTTCGCGCCCGCTGGCGGCGATCCCGCCGTCCACGGCGAGGCGGGTCGCGTCCCATCCGGCATCCAGCCGCGCCCGGCGCAGGGTCAGGGCCCACTGCGGTCGGGGGATTGCGGTGCGGTCATGACTTGATCCTGCCCCACCGGACCGAGGGTGCATCAGCAAACGTCCGCGTTCGTCCGTAGTCGTCACTGGCGGAGCCGGTGCGGGGGCCGTGAAGGTGGAACCAGCGAACGCACACGGACGCCGTCGCGTGAGCAGTGTCGCTATGGATCCGGGAAAATGCGGAGGTGAGGTCGTGGCCGTTGTGCTCGATGACGGGGGAGCGGATGCTCGTGGACTCGGCCGAGGCCAAGCACGTCGACCACGTTGTCGACGCTTTGGGGTCGGCGTGCACACGCGCCTTCGGTGAGCCGAATGCGGACTGGTTGTTGCCCATCGAATCAGCGGCGCCCGACACAACGGAGGACCTGAGGAGCAACGATCCGGTGCAG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACGGCTCCAAAGGAGCCGTCCACGTTGAAGG # Alternate repeat : GTCTCAACGGCTCCAGAGGGGCCGTCCACGTTGAAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-15.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 154764-154553 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000004.1 Nocardiopsis litoralis strain KCTC 19473 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 154763 28 100.0 33 ............................ ACGCGCTCCTCTTAAGTGCGACGATCCCATGAC 154702 28 100.0 33 ............................ GCTCTTCGCGGCCATGGTGGTGGTGCCCCTGCT 154641 28 100.0 33 ............................ GCCCCGCAAGGCCTGCAAGGCGTTGGCGGCCTC 154580 28 85.7 0 ......................C..TCA | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GCAGACCCCACGCCCGTGGGGGTGGAGC # Left flank : CGGCTCTGCAGCCCGCGTCATCGACGCCATGACGCTACCGGGCATCGGCGAATCCGAAAAACGCAGGGCATACAGAGCCTCCATCACACTCGGCACGAACAGTACCGCCCGCATCCGTACGAGCTGAAGCAGAGGTGCGCGATCGAGGCCCCGAGGCTGAGCGTCGGGGTGGTGAAGGAGGCCGGTCAAGCAGTGGGACCAACTGGGGTGTCTGGAACAGGCACCAGTGGAGGCCTTCACCATGACAGGACAGTTGCTGCGTCGGGCTCTGCTCGGGGCTGAAACCGGTCTCAGGGCGGCTGATCCCTCAGAGAATGCCTGGGGGATCGGCAAGGCACTCGGAGCCGACCGGATGGTTGGGCGGTTGCGAGTCGTGAGGACAAGGGCCAGCCCAGAACTGGTCACTTCAGTGTGTGATGTGCTCGTTGCAGGTTTTTTCTGTGCGCCCCGGGTGCGGATTGCAGAGCAGTAACGCTCTGAGCTTCAGCAGGTCGCGAAGT # Right flank : GTCCGGCCTCGCTCGGACAGCCGCACTGCCGTCATCGTTCCTGCTGCCTTCGATGCGCCCGACAAGCTTGCCGCCGGGGGTGTTGCCCCGGCCCGTCCCGGCTCGGCCGGTGGTGCGATGGGAACGTTTCGCAATCGCCTGGTTCCGGTCGGTGTTCATCGCCGAAGTCGGGAATGAAAACGGTTGTCATATCATTCTTGTGGTCGGACACCGGAAACAGGAGGAAGCATGGCACGCAACGAGACCCGCCCCATCACCAAGCTCAAGTCCACCGCCGGAACCGGACACACCTACGTCACGCGCAAGAGCCGGCGCAACACACCGGACCGCCTGCGCCTGAAGAAGTTCGACCCCGTCGTACGACACCATGTCGAGTACCGAGAGGAGCGCTGAGCCCATGAGATCCGGGATCCATCCCGAGTACCGGCCCGTCGTCTTCCGCGACAAGGCCGGCGACTTCGCCGTCCTCACCCGGTCCACCGCAACCAGCGACCACACCG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGACCCCACGCCCGTGGGGGTGGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 162-403 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000045.1 Nocardiopsis litoralis strain KCTC 19473 sequence45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================== ================== 162 23 100.0 34 ....................... ACGTTGGCCTGCACGTCGTGCTGGCGCACCAGGG 219 23 95.7 34 ..................C.... GCGCTCAGGCGGCAGGCGCGGGTGGAGACGAAGC 276 23 100.0 28 ....................... ACCTCGATGTCGGCGCCGCCGCGCACGT 327 23 69.6 31 CC.C..........TG..C..C. GCGACCACCTTCGTGTCGGCGTGGGAGACGG 381 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================== ================== 5 23 93.1 32 TGATGTCGCCGCTGGTGGTGGAG # Left flank : GCCAGGGCGTCCAGGGCGTCGGTCATGGCGCTCACGTCGCCACCTCCGTTCGTCAATGTCTCGTTGACGTTCATGGTGTCATCTCCTAGGTAGTGAGGTTCCTAGGCCTGGGGCGGCCGGGCAGGACGGGTCCGGCCGCCCCGGGCGGTGGTCTTAGCCGCT # Right flank : GACCTGTACGGATCCGGCGGTGGCCACGTGCACGTTGCCGCTGGTGGCCCAGGCGGCCACCTCGCGGATGTAGCCCGTGGTGCGCAGGCTCCCGGAGTTGACCGTGGTGCTCAGGCGGATGCCGCGCGGGACGCGGACGGTGACCGTGACCGGCTCGGTGATGTGGCCCTGCTGCACGGCGCCGCTGACGAGGTTGCCGTTGATGATGACGGTGCCGCCACTGACGACCGTGCCGCCGCCGCTGACGACGTTGGTGACGTTGCCCCCGCCGGCGGTGATGGTCGGCTCGGGCAGGTGCAGGCTCCACATCCCCCCGCTGTGGGCGACCTGGGCGCCGCGGACGATCTCGTCGGGGCCGGAGATGTCCAGGGTGGCGGTGACGGTCTCCTCGCTCGCGATGACGCGGACCTGGGCGGCGGTGGCGGTGAGGGCCAGGGTCTCGAGCTGGTCGGCCGGGACGGTGTGGGTGGCGTGCATGCGAACTCCCTAAGTTCCTAACT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATGTCGCCGCTGGTGGTGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 566-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000050.1 Nocardiopsis litoralis strain KCTC 19473 sequence50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 565 30 96.7 31 .............................T GCGCTCTGGCACGGTCTCCCTCTCCCTCTCC 504 30 96.7 31 .............................C GATTGAAATCGCCACCCGCGACCGGGCGCCG 443 30 100.0 31 .............................. GACCAGCGTCGACCTCCGGGGCCAGGACCCC 382 30 100.0 31 .............................. CGAGCACGCACGCGCCGACGAGGAGGCCACC 321 30 100.0 31 .............................. ACACGAGAGCTTTGACGCGTTCTGGGCTGAG 260 30 96.7 31 .............................C GCCGCCCTTTTCGTTGGCATCCTCCAGCGCC 199 30 100.0 31 .............................. GATCCCCGACAGGCCCTTGGTGAGGCCGCTG 138 30 96.7 31 .............................G CGCTGCTGCCCTTCGCCGCCGTGGCCGAGAA 77 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 9 30 98.2 31 CTGCGCCCCACGCACGTGGGGATGGACCGA # Left flank : CCACGGTCGGCCTGACGATCCCCTCGGTGCTCACCATCGGGCTCATCACCGACCGGACCGTGACTCTGGCCGAGAACCCCACCAACCTGGTCCTACTGGGTATCAGTCTGCTGCTCACCGTCAGCACCTTCACCGCTCAGCGTGTGACAGCTCTCCACGGTGCCGCGCATCTGCTGGTCTTCGTGCTCTACGGCATCACCGTGTTCTCTTAGCAGCTCGGAACCGGACTCAGCTGCGGATGCGACTGAACAGGGGGCCGAGTCGTCTCCCGCGCGGTACGTTCTGAGGGCCTACGGGTGCCGATTCCGCGCGCCTGTGGGGTAGAAGAGGGGGTGAGGTCTCCTCGGGCAGGGGAGTGAGGTCTCTCGTGAAACGGTACGGATGGCCAAGGTCAGGGCTGGCTTGTGCGAAGAGTGTCTGCCTGATTACAGGGGTGCGCGCAACCCCGATAGTTTTGGCTTCAAAACGATAACGGCGAGAGTTTGTGCAGGTCGGGAAGT # Right flank : TGCTTGACGAACTTCTGCACGCCTTCGGTCAGCTGCGCCCCACGCACG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCGCCCCACGCACGTGGGGATGGACCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 493-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000051.1 Nocardiopsis litoralis strain KCTC 19473 sequence51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 492 29 100.0 32 ............................. AGGTCGAAGATGTTCACAGGAATACCTCTCTG 431 29 100.0 32 ............................. ATGGCGTGTGCTTCGTTGAGCATGGCGCACTG 370 29 100.0 32 ............................. CCCTGGACCTCGTCGCGCTGGAAGACGGAGGA 309 29 100.0 32 ............................. CGTCTTGGTGTGGTCCAGTTCGGCCCGGGAGA 248 29 100.0 32 ............................. TCCTCCTGCATGGCCTGGCGTTCCTCGGGGGT 187 29 100.0 32 ............................. GGCGAATACTCCGTCACCGACGTCACCCCCGA 126 29 100.0 32 ............................. GAGGGGCCGGAGCACGGGTCCGTAGAGGTATT 65 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GTGATGCTCGATATCCGTACTGCCGAGTTCCTGGACGCGGTTTCCGATGCTTTGGCGGTTCCGCCTGGTCCGCATCCGGTGGCGGATTTCCTGCTCGTGCGTGGTCTGCGCCGTCGTTCCGAGGCCGTGCGGCAGGCGCTTGCGCTGGTTCAGCGTGATGGGGGTGTGGAGGAGGCGTTGGAGTTGCTCGATCGCGTGCTGTCCGAGTCTGCGGTGCCTGGGCGTGTGAGCGGGTGTGAGCTGATCGATCCGGGGCCGAGGCCTGTGGGGGTGCCCCAGCAGGGGGCCGGGCCCGGATTCGGGTTGGGTTTCGGGGCTGACCAGGGCTGAGGGTCCGCGTTCGGTTCCCGGTGTTTGGCGGGGCCTGTTCTGTGGGGCAGGTCCCCGTCATACTGGGGTCTGTGTTGACGAGCCCCGCTTCTGTTATCCGCGTGTTATCTGGACCTGTGAAGTTTGCAGATTTCCGGGTTACTCGTTGGTAGGTATGCAGGTCAGGAAGA # Right flank : TGATCCATCCGCGCATCAGGACGCCTTCGTCGGGTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5166-5439 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000051.1 Nocardiopsis litoralis strain KCTC 19473 sequence51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5166 30 100.0 31 .............................. CGCATGTATGGCTGCTGTGGCGTGCTCATGT 5227 30 96.7 31 .............................C CGGAGCCCTTGCAGGTCCTTGTCTTCGGGGT 5288 30 100.0 31 .............................. TGATCCAGTCGAGGTCGGGGGCGCGGAGCAC 5349 30 100.0 31 .............................. GGGCCGGGGTGGCCTGGGTGATGTCGTCGGG 5410 30 90.0 0 ...........A.............C...G | ========== ====== ====== ====== ============================== =============================== ================== 5 30 97.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : CGGAGGCGAGCTCGGGGTGGATCACCTTGACGACGACCCGCTCACCTTCGGGGCCCGCACCGAGGTAGGAGGTCCCCACGCTTCCGGAGCCGAGGAAGTGGGTCAGACGGTACGGACCGATACGGGTGGGGTCAGCGGATCTGAGGGGATGCAACGTACGGTCGCTTTCCGGGTCGTGCTGTGGTGCCGGTGCGGGCGGTTCGGGGATTGTCTCAGGTTCCCCGGGGCATGAGATGTGCGGCACCCGCCCATGGTTCTGAATCCGAGTCGAATTCGGGAAGGATGCGGGGCGGCCTCGGGTCGGCCCCAGCCACGGACACGGTCCTGGGCGGCCGGGTCCGCGCCGACCTCTTGTGTCCGGGGCCTGTTCTTCGGGATGGGGACCTTGCATACTGGGCGCTGTGTTTCCTGAACCTGCTGCTGTTACCTGCTTGTTACCTGGGCCTGCACAAGTTGCAGATTTCCGGGTTACTCACGGGTAGACATGCAGGTCAGGAAGA # Right flank : GTGTTGTGCCACCACAGGTAGGCGTGCTTTTCGGCGACGGTCTGAATCGTGCAGAACCCGAACGTCGGCTCCGCACTGCTCAGCTCCGGATGAGCCCCCGTCGAGGCACCGTCCTGTTCAACGTCCCGCACAGCTCTTCCCGGGCTGCGGGATCAGCTGCCGCCACCACCTCCACCGCCGTCGCCGGCGCTGAAACCGCCGCCACCTCCGCCGTCTCCACCGCCGGAGCTGCTCCCGCTCCCGAACTCTGAGCTATCCCCGGCTGCGCCGCCTCTGCCCCAGCGGCCGCCCTGAGCCTGACTGCCCCTGGCCAACATTATGAAGGCGAAAATGATCACTCCCGTGATGAACAAGAACATCAAAACGGGGTACACGCTCCTTTCAGAAGAAGTGTCCGATGCTTCCGACGTTTCAGTTCCCCTGGCCGGGTGATCGAACCTCGGAATGCTGGGATCGCCCGACGCTCCAGAGGTAGCGTCCAGTACCGAGCGGGAAAACTC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5207-5663 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000006.1 Nocardiopsis litoralis strain KCTC 19473 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5207 29 100.0 32 ............................. CAGGGGGTCGGCGGCGGCGTTCTCCCCCCACG 5268 29 100.0 32 ............................. ATACGGCGCTGCAGCTCGGCGCGGCGCTCCTC 5329 29 100.0 32 ............................. CACGCCATGTGGCTCCTGTCGTAGTGGATGTA 5390 29 100.0 32 ............................. GCCGCGGAGGCGAACAGAGCGCACCCGGTGTA 5451 29 100.0 32 ............................. AGCTGCTCGGAGAACGTGGACAGGACGGGCGC 5512 29 100.0 32 ............................. AGGTGCCCCGACGCGACCGCGGCCGACAGCGA 5573 29 96.6 32 ..........................T.. AGGTCGTAGACCAGCAGGCAGTTGACGATCCT 5634 28 93.1 0 .......................A.-... | TC [5657] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TCGAACGCGCGGACGCCCTGGAGATCCTTCCCGGAGCGCCGGCCGACTGGCTCGACCATCCGGAGGGGATCCGGGTCGAGCAGACCCCCACCCGCTTCGGGCGTGTGAGTGTGCGGGCCCACCGGAGCGGGGCCGAAAGTCCGGGGACGGTTGCGATCGAGGTCGAGAAGAGCTCCCGGAGCCAGGTCTGTCCGCGTGAGTGCCTCCTGCATCTTCCGGGGGAGGGGACCTGGCGGGTCGAGGTCAACGGTGTCGGTATCGGTACCCGGAGAGGCCCCGGCCGGGTACCGGTCACGGACGCGTTCGGGCGATGACCGGACGGGGGCGTTCCGGGGGCGGGGCCGGTGCCCGGTTTTCTGCGGCCCTGTTCTCCGGAGCGGGACCCCTGCATACTGGGGGTTGTGTTCACGAGGCCTGTTGGTGTTACCTGGGCGTTATCCGGAGGTGCACAACTTGCAGATTTTCGGGTTACTCGCGGGTAGACATGCAGGTCAGGAAGA # Right flank : CGCCCCGTCGGCGTCCACCAGTTCCGCGTAGACGACGACGTTGTTGGTGTATTCGTGCTCGTCCCGCTCGAACGTGCCGCCGCACGTCACCAGCCGCAGCTCGGCGCGGCCCCCGGTGGACCCGTAGACCTTGCGGGTGGGGAAGTCGTCCTTGTCGTACTGCTCCACGCCGTAGACCTCGAACACCGCATCGACGCCGTCGGCGCGGGGGACCGTGACTTCGTCACCGGGCTGCAGCTCCGCGAGACGGAAGAAGACTGCCGGTCCGGTCGGTGAGTCCACGTGCGCGCCGATCACCGACGCGCCCTGCTGGCCCGGAGAGGCCCCCGCTTCGTACCAGCCCACGGTGTCGGGTTCCGCGGGCACGTCCAGTTCCCCGTCGGAACGCACCTGGAGCGGAAGAAGGTGGTCGGTCTCCACGCCGATGGCGGGAACCCGCAGGCCGGCGGGGGCGGAGGGCCCTGTGACGGGCGTGTGGGGGTTCTCCGGCCTTCCAACGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7834-8046 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000006.1 Nocardiopsis litoralis strain KCTC 19473 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7834 30 100.0 31 .............................. CCTGTGGGCGACCCGTATCGACCTGCCCAAT 7895 30 100.0 31 .............................. GACCGGATCCGGCACCAGCGCCGCCGCCGGT 7956 30 96.7 31 .............................T TGGCCAACATCTCGGTCTCGGCCGAGGGGCA 8017 30 86.7 0 ..............T......G.C.....C | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GCGAAGAAGATGCCCGTACCTTTCCGGATATAACTGTCCGTAATCAAGCAATATCGGAGAGTTGAGGCGGTCTTGCCGTTGGTGGTTCGCCGATGGTCGGCGGTTGTACCGTCGCCGAACAGTCGCCGCCGGGGAGGGGCCAGGGAGGAAAAGCCCAGCTCCCGGGGGTGAGGTGCGCTCTTGTGATGGAGGCGGCCCTGCTCCCGTGGTCGCCGTGGGCATTGTTTTTCGTGGAGCGGTCGTGGGCGGGCGAGGGGTGCGAGAGGGCGGCGGCGCTCTCCGCGTAAGTGACTTCTCAGCTCTCCGTGGCGGCCCCGACGTGCATCGGCCTCTTGGTCCTCGCGTCCCGGCTCTCCTTGCTTTCCTGTCCCTTGGTGCCGAGACTCTGCATACTGGCACCTGTGGCTGACCAGATCACTGTCGTGACCTTTGCGTTATGCGGAGCTGCGCAAGTTGCAGATTTCCGGGTTACTCGTGGGTAGACATGCAGGTCAGTAAGA # Right flank : CGACACCGAAAACCCCACCGGAGGGGATCCGGTGGGGCGGAACTCCGTGTCAGCGTCTGCGGTACGGGCGGCTCAGCTCGAACCGACCGTCATCGTGCCGGTCGAGGGAACCGTCCGGTGCGCTGCCGCGTGGGGGAGCCGTGTGTGCGCTGGGGGTCAGCGCACCCAGACCTGCCAGGTGCCGTTCTTCTCGCACTTGAACTCGGAGAGGTCGTCGTTGCCTTCCTCGTAGACGTAGGAGTACCCCTCGAGGAAGCAGGTCTCGTAGTCGCCGAAACCACCGGCGAGCTCCCAGTCCGATGCGGAAGCGGGGCTTGCGGCGAACGGGAGGGCCAGGGCGGCTGCTCCGACCGCGAGGCCGGCGGCGATGCGCTGGGACCAGGACATGTAATTCCTCCGATGAGTACTTATCTGTGGGCCCCGCATTCGCGGGGGAGGTCGTGCTGACCACCCGAGTAGGGGGCGGTTCTCTTTCCGGGCTCACGGACCGGAACCCGGTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 20928-21262 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000006.1 Nocardiopsis litoralis strain KCTC 19473 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 20928 30 93.3 31 ............................GC AGAAGGCGGAGTTGGAATCCGAGCTGCGCCT 20989 30 96.7 31 ............................G. GGCATGTTCGATGCCTCGACCTCTGCCCCGG 21050 30 100.0 31 .............................. ACTCGCCCAACCAGGCCATCACCGCGGCGTC 21111 30 100.0 31 .............................. CCCGCGCGAACACGCTCGGCACCGTCGAGGT 21172 30 96.7 31 .............................C GGCGCCTGTACGTCACGAGCGAGTACCGGCA 21233 30 93.3 0 .....................A.......A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.7 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTCCGTATGGAGTCCGTCGGCACGGGGCCTTCGACATATGAAGTTTGAAGGAGGGTCGATGCGGCGGTCGCCTCTCGGCGCGTGGCACAACACGGTTCCGAGTCCGCCTCGAGGGCGCGGTATTCCGTGAAGGCTTTGAGTGGAGCCCGGGGGACACTTGCTACCGCACCGACCCTCGCCGCGTGTAACGGGAGGGGACCGGGTGGTATTCCGCGCGCCTCAGATTTTTTCTGCCGTCTTGTCGAGCGGCTGTGGCAGGGGCGCCCGTCCGGGAGAGGGGAGGTGTCCGTGGGTCGGCCGCTCCGTGCGTCTCGGGTCGGGGCGGCCGACTCGGGGGCGGTTCATGTGAAGGAGAGGGATGTGTCCGGGGTCTGTACGTCGCATACTGAGACCTGTGCTTCCTCGACCGAAGGGTTGGCGGCGTGATCTCAGCGTTACCTGGGCCTGCGAAGTTTGCAGATTTTCGGGTTACCCGCCGGTAGGCATGCAGGTCAGGAAGA # Right flank : AGGAACATGAGGGCCACCACGTTTACGAGGACGTGTTCTCCCCGAGCGCGGGCGTGAACCTGATGGAAGAGGGCTCGGAGAGCTTTCAATCTGCGGGTCGCTCCGTGATGAAAGTGCCCTTGCCGTGGACGGAGACGACTACGCCGCGCTCTCTGAGTTCCTTCATTGCGCGTCGGACTGTCATGTAGGACACGCCATAGTCCTCTGCCAACTCACGCTCAGGAGGAAGCCGTGAGCCGGGTCTGAGCTTGCCTTTCTCAGCCATGCCCGCGATGTGATCAGCCACCGCCATGTAGCGCAGGCCTGGCCCGTCCGCCGGGATCTTCGGCACATCCTCTTCGCTCATGTGAGCACGCTAGACCTGGGGTGGCCTACGAAGAGGAAAAGAAAGCTATGCAGAGCTATGCATTTCTTGTAGTGTGTAAAGCTCCGTGACACACGGAACCCCGGCGGCGTGTTAGCGCACGCCCCGGGGCCATGGCCGACCTGTAGAAGGCAGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 22877-23211 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXL01000006.1 Nocardiopsis litoralis strain KCTC 19473 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 22877 30 100.0 31 .............................. CATCTCGGGGTCCGTGACTACGGCGGGGATC 22938 30 100.0 31 .............................. TGAATTCCGTAAATCGGATTCGGGGAACGAC 22999 30 96.7 31 .............................G TCCACAACCTCTCCGGCCCTGGGCTGGAGCG 23060 30 96.7 31 .....................G........ GGAGCTGGTCGATGGTGCCCGCCACGAAGGA 23121 30 93.3 31 ..........T..................T TCCTGCGGGTCTCCGCCCATCTCTCCGAGGG 23182 30 70.0 0 ...........A.G.......G..AGGGGT | ========== ====== ====== ====== ============================== =============================== ================== 6 30 92.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : AGGCGGCGTAATGCTCGACATCCGCACTGCTGAGTTCCTGAACGCGGTCTCCGATGCCTTGACGGTTCCGCCCGGGCCGCACCCTGTGGCTGATTTCCTTCTCGTTCGTGGGTTGCGCCGCCGTACTGACGTCGTGCGTGAGGCGCTCGCGCTCGTGGAGCGTGACGGTGATGTGGAGGAGGCATTGGAGCTGCTCGACCGTGTGCTCTCCGAGCCTCCGGTGCCCGGCCGCGTGAGCGGGTGCGAGTTCATCGACCCGGGGCCGCGTCCTGTGGACGTACCCGAGCAGGGGATCGATCCCGACTTCGGGTTCGGAATCGGCCAGCTCTGACGGCCCGCGTTCGGTGCCTGGTGTTCAGCGGGGCCTGTTCTGTGGAACAGGTCCCCGGCATACTGGTGCTGTGTTGACGAAGCCCACTTCTGTTGTCCGCGTGTTATCTGGACCTGTGAAGTTTGCAGATTTCCGGGTTACCCGCCGGTAGGCATGCAGGTCAGGAAGA # Right flank : TGGTCCCGACCAGCGCACCCGCGCGTTCGGTATGACGGCGTGCTCTCCGTGGGGAGGTGCCGGAAGCTGGGCGCTGACACACCAGCGCCTCACAGGCGCCGGGGATGCCGGGATTGGCCGGATTCGGCCAATCCCGGTGTTCGCGGCACGGCGTCCCCGAATCTGCGATTGGGTGGCCCCATGACCTCGACCCCCCACGAGTCCGCCTGGCCCGGCGCCCTCTCGGCCGCTGCCAGGTCCGTGTGGGCCAAACACGACCGTGACACGGACGACTGGCTCCCCTCTGGCAACACATGTCCGACAGCGCCGCCATCGCCGGCGTCCTGTGGGACCACTGGCTGCCTCGCCAAGTACGCCGCCTCCTCGCAGCGGAACTGCCCGGCGGGTACGACGATGCCCGCGCGCTCGCGATCTTCCTCGCCTGCACCCACGACATCGGCAAGTGCACACCCGCCTTCGCCTGCCAGGTCGAGGCGCTCGCCGACCGCATGCGAGGGCAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //