Array 1 40906-41056 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOB01000083.1 Streptomyces albidoflavus strain CR16 Scaffold1_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40906 29 96.6 32 ............................G GGGGTCCGGTGCCCGTCGCGGCCGACCTTGGC 40967 29 100.0 32 ............................. GACGGCTCGGCGCACGAGGCCCGGCACCTGAA 41028 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CCCGGCACCCACCCCCGCGTCGTCCCCGTCCACCACAGAACCCCTCCCCGTAGCCCGGTCTCCCGCTGCGGGTCACCTTAGGGGACGGGGGGTTGGGCGTCTTGGGGGTGAGGGGGTGTGGGTGGCGTGGGCGGCTGGTACGGGGGTGGGGCTTCAGGGGGTGTGGGCGGGGGGTGTTCGGGTGCGTTCGGGTGGGGCGCAGAGTGGTTCGGGGAGGAGGGGGCGTGGCCGGGCTGGAGTTGACGCGGGGTGTTGTCCTGTTCCGATCGGCGGGAGCCACCGCGCAAGCCTGGTCGGTAGTTGGGGGTCGGGTTCACTTGGGTGCGACGTTGCTGGGGGTGCGCTTGAGAAGGCGGAGTCAGGTGGGAGGAACTGGGGGAGGATGGACGGGGCTGATGGATCGAGAGGAGGGCGTTATGCGGCTTTCGCGCCAAAGGCCGGAATCGACGAAGCTTGCGGGAACGGGTGGTGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : CGTGCCGGTCACGGCATCCCGGCCTCCCTCAGCTCTGCCCACGCCCCCTCACGGCTCGCAAACCCCACCCTCCACAGCAGCCCCCTCCGCGCCCGCGAAAAACCCCACAACCCGCCCCGCACACCCCCCACCAGCCATCCCTCCATGCTCCCCGTCCCCCACCACCAACAACGACCCCCCAGTTCGCGCCCGCATCGCCCGGGCCCAGGGCAACGGCGTGATCACCTCGTCCCTGTGGGCGACCAGCAGCAAAGGCCCGTCCGCCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGCCGGCAGGCCCGCGCACGTGCTGGTCCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGCGCGGCGTTCGCCGTAGGCCGACCACTGTTCCGTGAACGAGGCGGCGTGGGTCACCTGGGAGCAGAGCAGTGCGGTGCCTGCGAAAGGGGCGACCAGGGGCGGTGCGGCGGTGCGGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 99943-99731 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOB01000083.1 Streptomyces albidoflavus strain CR16 Scaffold1_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99942 29 100.0 32 ............................. TTCTCGAAGCTCTTCGCGGCCTGGTCCGCGTA 99881 29 100.0 32 ............................. AGCTCGCGGGTGATCGGCTGGTCGACGATCAG 99820 29 96.6 32 ..............T.............. GGGTCGTCGCCCTTGTCCGCCGCAAACACCAC 99759 29 75.9 0 T........T...GT.......C.AC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : GCATGAGCTGACGCCGGTTCTCTTCACGGTGGCGGAGGCGGGCGATCCGGTGGCGTCCGGGCTGGTGGACCGGCTGGCGGACGAGGTCGCCAACATGGCCACGGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCGGCGCCTGTGCTGCTGGGCGGGAGCATCCTGGCTGCGCGGCGGCCTAGGCTGGATGCGGGGGTGCGGGGGGAGTTGGGCCGGCGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGCTGGGGGCGGTGCTGTTGGGGATGGACGCGGTGGGGGCGGGGGTGGGGGCTTATGAGCGGGTGCGGGGGTGGTTCGGGTGAGGAGGCTGTGTGGGGGCGTGGGGTGGGCTTCAATGGAGAGGGGCTGGCGTTTGCGAAGCTGAGGGATTTTATGGGCTGTTCGCGCGGAATGCCGGAGTTTCTAAAGTTGGCGCGGGTCGGGGGTAGGGCGGGGTAAACCCGCAGCTCGGAGAGA # Right flank : TGCTCTGTGATCACGGCGAGCAGCAGGGTCAAGCGGGTGCTCACACATGCAGGCCTCACCCACGCCGACCCCGACCCAGTCGCCGTACTCCGCCCCCCAATCCCCCACCCCCGGGAACCAACCCCACCCTCCACCACGTATCCCCCACAGAGCCGTCCACCGCACCCCCGCCCACCCGGGCCCCAGCCCCCGGATCAGGTGAACGCCCGTGTGGTTCGTGGGGAGTGCGGCCATACTGGCGGCCGGGCACTAGCTTTCCCGGGAGTGGGGAAGGGTGTTCTGCGACAGGACCGAGGGGGAGGTCGCGTGAGCAGTCAGCCGACGGGCGGGGCGCCGCCGGGGTCCGGCGTGGGTGCGTTGTCGGTGCCGGGGCAGCGTTCGCCCGCGGCTGCTCCTGAGCCGCCTGGTCCGGCCGGTGAGCCCGGGCATGTTCCCGAGCCGCCGCACGAGCCCGGTCTGCCCTCGCGGCTGCGGGCGCAGGCTCGTACCGTGCCCGGTGG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154955-155173 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOB01000086.1 Streptomyces albidoflavus strain CR16 Scaffold1_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================= ================== 154955 26 100.0 39 .......................... TTGAACGGACGAGTCCGATCCGGACCTCGGCCCAAAACC 155020 26 100.0 38 .......................... TTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAAGT 155084 26 96.2 38 .......................G.. CTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 155148 26 96.2 0 ........................C. | ========== ====== ====== ====== ========================== ======================================= ================== 4 26 98.1 39 CAGCCCGGCCGGCGCTTGAGGCCATC # Left flank : CCAGGGCCGCAGGGCATCCAGCGCCGCCGGCGCGGGCGGCGTACCCCCGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAGCAACCCGGCCCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATGGCGCCGGCATCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCCCCGCCTGAAAATCAGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGGCCCGAACGAACTGGTCCCACCGACAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCGCCGAGAGGCAACTGGCCGACCGCCGAAAAA # Right flank : CCCACCGCACCCCCGCCGGGGAGGGAAGACTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAAAACCCGGCAAGCGGCTCCCGGGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCACGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCGAGGGACAGCAGACCCAGTACACGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGACGC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //