Array 1 2029-2300 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAR01000021.1 Ligilactobacillus agilis strain NB11 sequence21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2029 29 100.0 32 ............................. ATATTAATTTTATCAAGAGTCGATGGGAAAAA 2090 29 100.0 32 ............................. ATATTAATTTTATCAAGAGTCGATGGGAAAAA 2151 29 100.0 32 ............................. GGGCACAAGTATTTCTGGCAAGATAATCAATG 2212 29 100.0 32 ............................. TGGCAGCAATCAAAGACCCGTTAGGCAAGTCA 2273 28 89.7 0 ......................C...-A. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 CTTCTCCCCACACTAGTGGGGGTAATCCT # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTACATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAGGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCCTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAGCCTCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGATATTTATAGATTTAAGAATGCCGGTTTATCAGTATTTTTTTAGT # Right flank : TGAATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTACTGTGATGGGTTAGATGTAATTGAGGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.50,-11.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 34772-34475 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAR01000027.1 Ligilactobacillus agilis strain NB11 sequence27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34771 30 100.0 37 .............................. TTTTTCATGAGATAGAATCTCTAGAGAATCCTGTTCG 34704 30 100.0 35 .............................. TAAGTATCAGAAAGAGGATTCAGCACGTTATTAGG 34639 30 100.0 38 .............................. ATTCTTCGGGGGTTTGTGCTTTTTCAATCGCAGAACGC 34571 30 96.7 37 .............................G CAGGATAGATGCTTTTTTGAGAGAGAACGAGATTACA 34504 30 80.0 0 ....T.......T.......A...AA...A | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 95.3 37 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : GCTTAGATATAATATAAAGGTTTCCTTAGATAAGGCTTTATGATATTTTGTGGCCTTGTAACCGTTGATACATCAACTTTTATATTTTATAAATATTTGGTAATGTAATGCTTTTTTAGGAAAGTATGCCGGGTATGCTTAACAATTATAATAACTTTCCCTAGTGAGTACCGTATGTTTTATATACGATATTTTTTTATACTCTCTTTTTGTTTTTCGTTAGTCTAAAAAATATGCTGAAGTATGCGTTAAAGGCCTGCGAGGGAGAGTCTATAGTGATGGTTTTAATTCGGAATGCTAACTAAGCTTCAAGTATTACATCTGTCGACTGTAGATAGAGCAAAATTAAGGGGACATCGACAGATAGTGAAAAAGTTGAAATTACTGAGCTTGAAAGAGTTTACAGAAAAAAGTATCATGTAGATATGGGGATAAAAGTAGTGATAGACAGAATGCGCGTGGAAACTAGTTGATAGTACAAAGCTTTTAAAGGGTAGGGG # Right flank : GTTACTAAGTTTGTGTACATAACCATGTGTATGTTAATACATCGATTACTAATATATGTAGTCATGATTGTGTACAAATATGACCAACAAGTAATTTATATGCCTAGTTATATCCACATTCTGTATACGCAGATATGTACATTACTAAATCATATACTCATCAACGTACATACAATTGCTTAACTACCTTGTATTTTTGATACAAAGGGTGTATGTACTAATTTAATTTTTTAGTATCTACAAAACTTGAGGGTATCAAGTTAGAACTTTTTTATTAATCGAAGCAAATACAAAATAGCAAATTTTATTTGGCTATAATAGTGGAACAAAAAGAGGAGAAGGTTAACTGTTATCAAAAATATAGAACATTGTAGAAATTAATAGAGTTGTAATCAATCGGAAAGTAAAAATGTAGGATTGATGTATTTCAGAACCTATGTTTTTAATTTAGGTTAAGAAAGCGCTATCATATATATGATAGGAGGTGAGCTTAATGCTAC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 75736-75506 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAR01000027.1 Ligilactobacillus agilis strain NB11 sequence27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 75735 31 100.0 34 ............................... TTAAAAGGTTTAGCTAACGCATGGCAACAATTCA 75670 31 100.0 37 ............................... TACGAATCAAGTTCTTAGTCGTATTCATAACGTTATC 75602 31 100.0 36 ............................... CTGAGTTCATCACACTCTCTGTACCTAAGTCATTGG 75535 30 90.3 0 ...-.............T.A........... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 97.6 36 GATTCTATTTAACTTAAGAGGAATGTAAATT # Left flank : CAGTTGAATAAACGCTGACTATTGATTTTGTGGAGACGCATTTTACCAATCAAGTGTTAGTGTAGTTAGAGGAAGCCCCTTGGTAGCTGGATGGCACCAAGAGGCTTTTTTACTGCACCTGAATCGAACTAGCGTTTATTTTAGGCCGGAAGATTTTTAATATTGGGAACTGTATTATTGAATTTTATGGTATCATTAGTAATAAACCTCTCCTACGTTAATTATTCTAGTCTACTTGGTAGGAGGGGGTTTTTATTATCATACAAGAAAAAAGCTAGTTAGAAAATGGTTCTATTAGTAACGTTACGTAATGGAGTGTTTATATCTGTCGACCTAAGATAGGGTAAAATAGTGCTGGTATCGACAGATGACAAAAAGGTTGATATTAAAGGACTTGAAAGAATTTAGGAAAAAAGTAGTATATAATTGAAGGTGAAATTTGGTGATAGACAGAATGTATGTGAAATATAGTTGGTAGTATGAGCTTTTGAGGGCGTAGT # Right flank : TAGCTAATAGCGACTTGAAATCAATATTGGTTATCAAGAAAGCGGGTAGCTAGAAATAGTTACCCCTTTTCATATTCTAAATTGCAAGTACTTCATAATAGCATGTATGTAAATATGCTACTAACACGGACATGGTACAGGGGGACTATATCAAAGCGTGCTTAGCCGAGATTGTAGGAGAAAGGGTTAAGTCCACGCATGTGGGGAAAATCCTAACCGATATTAGGTGCCTCTACTTGAGAATACTGCTATAAATATAACCAGCCTATGATTGAATGCTCACGTTTCAATCATAGGCTGGTTTAGTTTAAGTTAGTTATCGTTGTGGTAGTAATTAATCAATTCTTCATAGGTGTCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGAGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATCCT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 22735-21313 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAR01000059.1 Ligilactobacillus agilis strain NB11 sequence59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22734 36 100.0 30 .................................... TACCAGTTTTCAATGAACTTGATTGCTGCT 22668 36 100.0 30 .................................... CAGTGAAGAAGAAGCTTTAGAAGCAATGGA 22602 36 100.0 30 .................................... CTTACGAGCCTATCAACCTTCGTTGGGGCG 22536 36 100.0 30 .................................... GTCAAGAAGGTTGAAGCCGATATTGATTTT 22470 36 100.0 30 .................................... CAATCAGTCGTTTTGTTGTCAATAACTTGT 22404 36 100.0 30 .................................... AAATTCCACTTAGGATATCTGAAACTTTGT 22338 36 100.0 30 .................................... CACATCCCCGGTCTGCGCTTCTGACACCGT 22272 36 100.0 30 .................................... ACCCTAATAGTACCATTTTTGGTAGTTGTT 22206 36 100.0 30 .................................... GATTCTTACCAACGGAACAGCAGTAATGAT 22140 36 100.0 30 .................................... TTATGGATCATTAGCATTGAGTTTTCAGGC 22074 36 100.0 30 .................................... TAAGATTCTTTACGCCGAACCATTTCATCA 22008 36 100.0 30 .................................... TATACTGCTGAGAACCATTCTTAATTTCAG 21942 36 100.0 30 .................................... TATGATTTGGTAACTGAAATCGTCTGATGC 21876 36 100.0 30 .................................... GTTAAGTCTAACAACTGATATTCTAAACGG 21810 36 100.0 30 .................................... TCCTCCTATTGTTTAAGCCCTAGCGCATTA 21744 36 100.0 30 .................................... ATCGCTCGTTAAATTTTCATCAGGTAGAAT 21678 36 100.0 30 .................................... GGTGTTTGTTCGTAAGCTTTCGGAAGCAAA 21612 36 100.0 30 .................................... ACTTTGAATAATCATAGATAATCATTAATA 21546 36 100.0 30 .................................... GGGGTAGACGAATTTTCAATCAGAGCCGAA 21480 36 100.0 30 .................................... ACCAGTCTAGAAACTCATAAGCATTATCAC 21414 36 100.0 30 .................................... ACAACGATATCCAACTCTTCAACATTGCCA 21348 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Left flank : TTAATCATGACTTAGATAAACGTTACAAGCTAGAGTTAGTTAATAAGATTACCGAGGGCTTGGCTCCGCACGTGAGGACAAGTATTGAAAAGAAGGCGCGCGAATTATTTACACTCTTGCAGGAAAGTTTGTTTATGACAGATATTCCTTTAGAAGTTAGTTTTGATGGGGATGTTAAACGGTTACTTAAATATGCTAACATCCACTTACATCCTTCTATATCTAATGATGCTTATGGTATAATTGAAAGTGATTTAAAACTTCATATTGAGTGTGATGATAAATCGTGTATTGTGTTCAATAACCTAGCTAGTTATATGACGCAAGAACAATTTCGTGAACTTCAGTATGTTAATAACGAAATTGGCACGAAAGTTCTTCTAATTGAATTTTCAGATTTGGATAAGAAGGACTATTATAAAAACTGTAATTATTACTATATTGATGCTGACTTCGTTGGTTGGTACTTCTAAAGATTAGATATTGATTAATAAATATCG # Right flank : TATAAAGTATCTGAATAGCTTGCCAACTTGGCCCTGTGGTAAAATGAGGGCAAGACTAAGTGAAGGTTGTGATCTTGTGAAACTTATTTCCTGGAATATTGATTCGTTGAATGCGGCGCTGACCGGCCAATCAGAGCGGGCAGAGCAAAGCCGGGCGGTGCTTGCTACCATTCAAGCCCAAGCACCGGATATTGTGGCTATTCAAGAAACTAAGTTGCCGGCTGGTGGTCCCAACAAGAAGCACGTTGAAGCGTTAGCTAAGTGGTTTGCGGACTATGATTTTGTTTGGCGCAGTTCGGTGGAACCGGCTCGGAAAGGCTATGCGGGGACGCTCTTTTTATACCGTAAGAGTTTAACCCCTAAGGTAACCTATCCTGAAATTGGGGCGCCTAGTCCGATGGATCAAGAAGGTCGGATTATTACTTTGGAGTTTCCTAAATTTTATGTTAGCCAGGTTTATACACCGAATGCGGGGGATGGACTTAAGCGCTTGGCCGAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 53585-52761 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAR01000009.1 Ligilactobacillus agilis strain NB11 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 53584 30 100.0 35 .............................. ACTTATAGTGACGGTCAAGCCAAGCTTAGAGCCGA 53519 30 100.0 36 .............................. TTAGGTGATAAGCCGGCAGACGCTAATCCGGATTTT 53453 30 100.0 35 .............................. TGTATTCTTTTTCAACTAATATAACCGCCTTTTGC 53388 30 100.0 35 .............................. CAATTACAACTGGCTTTTCTTCTTTCTTCTCAACG 53323 30 100.0 37 .............................. TTAGCTCAACGTTTTACGCCAAACTTAACACGAACAG 53256 30 100.0 36 .............................. ATCCTAGGTGATAAGCGGAGCAAGACGAAATGGAGC 53190 30 100.0 36 .............................. GCTCTGTGCCTGGAGGTACTCGATAAAGAACACGTG 53124 30 100.0 36 .............................. TGAACATAACTATATGATTTATTGACTGAGATAGTT 53058 30 100.0 39 .............................. AAGTGGCTAGCGCTCGTTACCTTCCGCCTTGCTGTCATC 52989 30 100.0 36 .............................. AGAATCAACGACATTGACGAATTGGCTAAGGCAAGG 52923 30 100.0 36 .............................. CAGCTTTGGTGAGAGAATTGATGACCTGACGCAAAC 52857 30 100.0 37 .............................. TACACCGAACCCTACACCTAAACTATACACCTTCACC 52790 30 96.7 0 A............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.7 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTTAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAAGATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGATGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGCAGT # Right flank : AGGGCTCTATTCAAAACGCTGGGTGTATTATTTTCAATGGATTCTAAGAAAACAACTGATTTTCTTAGAATCCCCTTTTTTCAAGCTTTAATTCAGAAGCCTATCTGTTGTTTTTTTAAATTTAACTAAAAAAGGTGCTAACTTAGATTTCAGAAGTTAGCACCTTAAATAAGTTCTATTTTTCTTGGGAATCTTTGACGAAGAAAGATAAGCAGTTAATAACGATAAAACCGCCAATCATTGGAATTAAGCCGGAAAGCTTAGCGTCAAAGGTGTAGCCACTTAAAGCGGAAACGATGTAGCCTAAGACTTCGCCGTAGATGAATCCCCAAAATAAAATTGTTAATTGTTTTCCCATCATGAGCACCTCACAATATATAAGTAGTTTAACACATTTGTCCTAAAAAAGCATAAGAAAATTTTTACGAGAAATTTGTTATAATAACCTTAGTAGTTAAATGAGTAAAGGGCAAAGGAAGGTGAGAGAATGTTTTCACCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //