Array 1 208467-207096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDUE010000010.1 Saccharopolyspora sp. HNM0986 NODE_10_length_275939_cov_68.081565_cov_68.081565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 208466 36 100.0 36 .................................... CTCGACGTCGGAGCTGGCGCGCATCCAGCGCATCGC 208394 36 100.0 37 .................................... TGTGCGGTGTAGGTGTTGGTCGACCAGTAGGTGTCGG 208321 36 100.0 39 .................................... CCGCGCGACAGCGCAGAATCACCACATCGCGAAAAACGA 208246 36 100.0 35 .................................... CGGGCCTTCTGCTTCGCCGGCATCCGCCCCGAGTC 208175 36 100.0 40 .................................... GCCGATCTGATCCTGGCCAAGCACCGCGAAGGCGCGACGT 208099 36 100.0 41 .................................... CGGCGGGAAACGGGTTCTTGATGGTCGACATGTTCGGCAAC 208022 36 100.0 40 .................................... TTGCCGCCGTTGGGCGAGTTGCTTGTGCCAGGGGTGCCGC 207946 36 100.0 39 .................................... CACCGGCCGGTGCTCCTCCGGGCTGACTTTGGCAACCAG 207871 36 100.0 40 .................................... GCGACCAGCCGCACCGTCACGCTGCGGGGCACCTGCTCGG 207795 36 100.0 42 .................................... GACCTTGGCATCCAGCTCCTCCAGCGCGCCGCGAAGCTGCTT 207717 36 97.2 36 ..........................C......... TTGCAACCAGTCCAGATCGATCCTCACTTCTGACCT 207645 36 97.2 36 ..........................C......... TCGCAGGCTGTCGGCTTGTCCGAGCGTGTAGCCGGC 207573 36 97.2 35 ..........................C......... AGCTCGAGGAAGACGGCGCCGAGGGCGCCTTTCCA 207502 36 97.2 41 ..........................C......... CACCGGCCCCAGCCGAGCAGGCGGGTACGCCAGCTTGCAGG 207425 36 94.4 39 ..........................C....A.... CACGGCGCTGACGCCAGGGATCGACTCGATCCCGTCCAG 207350 36 94.4 35 .............G............C......... GACCAGCCCAGCACCTTCCGGGTCACACGCGAACA 207279 36 97.2 37 ..........................C......... CTGTGGAAGATCGTGCACAAGTGGGACGAGATCGCGT 207206 36 97.2 38 ..........................C......... GTAGGCCCTGCCCGTCGACCCGTCGCCCACCACCAAGG G [207203] 207131 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ========================================== ================== 19 36 98.4 38 CTGTCACCGGCTCTTCGAGCCGGTCCTCATTGCGGC # Left flank : TGTCTGCCGAACTGCCCGCGACGACGCACTTGTGGGCGTGGGCTGACCGATGGTGGTTGCGGGTGCGCATCGATCACGACCACTGGTGGGCGGCGCTGCTTACCGAGGGGAATTCCGCGCAGCTGTGGGAAAACCCTGAGCCGATCGACCCGCCGACCATTACGGAGTTCTGCAACTGGGGCGAAAACGAACGGGAGGTGCGGCAGTACCAAGGAGCGCCGGGCGTGCGCGGACGCGACGACATGCTCCAGCTGGTGCCACTGCGACAAACCACGGCGATCTTCATCGGCGAAACCGCCACGACGGCGACCCGCAGCTGAGCGCCTGCGAGCGGTCCGGCTCCGACCTCCGCACGCCGAGCCGCTCGCGCTGCGTCTTTGCAGGTCAACGCCATACGCCCGATCAACTGATCGAATGAAACGTTCCGATGCGATCTCCAACGCGACCCGCTCGCGATGATCTTTGAAAACCCAGCGCAACGGCCCCAAATTCCGGCTGCC # Right flank : GTCTGATCGCCGGTCGCTTCGCAGTACGGCCACACGCTGGTGTTACCGGCTCTTGCGCTTCCAACGCGCACTGCAGTGCAGGCGTGTTACCCGTCGAAGGTCAGTGCGGGCAAACCCCGCCCGGCACCGCGGGCGACGAAAAGGGCGCCGGATTCCGGGTGGGCGGTGAGGTCCGTCGCCTGCCTGGACGTGGTGACGTAGAGGTCCGTGCAGGACGGGCCGCCGAAGGTGCAGGAAGTGACGCGGGGTGCCGGGATGTTGAGGACGTCGAGGAGTTCGCCGCGGGGTGAGTAGCGGTGCACGGCGCCGCCGCCCCAGAGGGCGACCCACACGTCGCCGCCCGCGTCGACCGTGAGGCCGTCCGGGGCGCCGAGCGCGGGGTCGATGTGGGTCAAGGTCCGGCGGCGGGAGAAATCCCCTGCGGTGTGCTCGATCGCGTCGATGCGTTGGGTGGGAGTGTCCACGTAGTACGCGGTTCTGCCGTCCGGGCTCCAGGCGAG # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCTCTTCGAGCCGGTCCTCATTGCGGC # Alternate repeat : CTGTCACCGGCTCTTCGAGCCGGTCCCCATTGCGGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.90,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 218127-217426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDUE010000010.1 Saccharopolyspora sp. HNM0986 NODE_10_length_275939_cov_68.081565_cov_68.081565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 218126 36 100.0 38 .................................... CAGTCCGTGGATACCGACCAGCCGAAGCTGCACGACGG 218052 36 100.0 41 .................................... TTCCACTGCGGAAGCGTCAGCCCCGGAGGTTCTTCGGCCTG 217975 36 100.0 40 .................................... TCGGTGTTCCTGCTCAACGCGGGCATTCCGCTCGCGGCCG 217899 36 100.0 36 .................................... GCGGAATCCTCCCGCGACGTGAGTGGCGCCCCGGCC 217827 36 100.0 36 .................................... GAGCAGGGCTTCCGTTTCGATCTCGCACACCACCGG 217755 36 100.0 38 .................................... TCACGTCCCGACCGGCGTTCTTCAACGTCGTCTCGCCG 217681 36 100.0 36 .................................... GTATCCACCAACACCAGGTCGTAGTCATCCAGGAGT 217609 36 100.0 41 .................................... TGCTTGGTGGCTGATGTGGTCAGCGGATGCGGTTGAGCCCG 217532 36 100.0 35 .................................... CGCGCGTCGAGCTTGCCCATGGCGTACGCGACGGC 217461 36 94.4 0 .......................C.....C...... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 99.4 38 CTGTCACCGGCTCTTCGAGCCGGTCCTCATTGCGGC # Left flank : GACGCAGCCCCGGCCGCGGACGAGGATGACGGCGAACTGCCGACCGGACCGGAGCCGGCCGCAGGGATGCCGCGAACTCCGCGCTTCGAGTTCCTCGGACTCGGACCTCCATGGCTGAACTCGGTCACTCCACTAGAAGAAGACCAGTACAAAGTGGACGCCGAAGAGCTGGCTGCCGTGAGCGGACTCTGCGAACGGGTGCACCTGCCCGTGGCGTATGCGCCTCGCGTGGCGGTCGGCTATCGGCACTACCCGCCAAGAGCGGCTTGAGCTGACGCCGACCACGAATCGGGTGCGCCCCTCTTCGGGATCGCACCCGGTTCGTGCGAGCGGTCCGGTTCCGAGACTTTCAGGCGTAGCCGCTCGCGGACCGTTTGCGCAGGTCGGGGCGGGTGTTGGCGTGAGGTAAGATCGATGCTGCCGGGCGGCGCGATCTCCATCGGCCGCCGCTCGCGATGATCTTTGAAAACGCAGGTCATGGGCCCCTTTTCCGGGCTGCC # Right flank : AGCTCTGATGGATCTTCTTTAGCGACTGTCAGCGCCTGTCACCGGCTCCTCGAGTCGGTCGTTCGCGAATGGCGCCACATGCCGAACCTGACCAGCCCATCTCAAGCGTTCGGCTTCGGTTCAGCAGTGCCGCGTCACTGCTTGACCGGAAGGCATAGGCCCATGCCGAGGTAGCGTTGTGCTCCGAGGATTAGTGGGCCCTCGATGGGGTCCGGGAATTCGATGGTCGCGTGGGAGAAGGGGCGCGGAGTGCGCTCGCGCCGGGGCAGGTCCGCCGGGCCGAGGGCGACTCCGCCTTCCGTTAGTGGGTCGCGATCGACCGTGATCGCGGCTGGTTCGCCGAGTCCCATGCGGACACACGTGCGTGCCAGCTCGGCGGCTACCTTGCCTCGCCCGGGGAAACGGTTCAACACGATGGGCGTCACGGTCGTCCAGACTCGGGCGGATGCGCACCAAGTAGACGATTCGAGAGAAATCTCGGCCGGTGCTGGGAAACGGAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCTCTTCGAGCCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.90,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 223394-223795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDUE010000010.1 Saccharopolyspora sp. HNM0986 NODE_10_length_275939_cov_68.081565_cov_68.081565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 223394 36 100.0 36 .................................... CGCGATCGCTCCAACAACCTCGGCATCGTCGCGATC 223466 36 100.0 37 .................................... CAGCCGCGCTCGCAGGTGTGCCGGACCGCGGCCGCGG 223539 36 100.0 37 .................................... ACTGCGGCGCGGGACACCGTCTGCTCAGCGCCGTCGA 223612 36 100.0 42 .................................... GGGCGCGGGTCGTCGCCGGGGTTGAGCTGGTCTCGGTAGCGG 223690 36 97.2 34 ..................T................. TGCACGATGTTGACCACACCGACCAGCCCGGCCA 223760 36 91.7 0 ...................T......T....T.... | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 98.1 37 CTGTCACCGGCTCCTCGAGCCGGTCCCCATTGCGGC # Left flank : GTCCGCGGTGGGCATGGCCGATCCGGGACGGTCGACGACGCGGTGCACGTGACGGCCGAGGCGGGTGTCGTCGGAATCTTGCCAGTGGCCTTGAACCTGCTCGAGATGGAACAGCCTGGGGCAGTACACGAACTTGCTCAACGCGCGAGCTGGAATGAAAGACTCGGGTTCCATGGTGCTTTCCCCGACGTGATTGCTCTTGTGCCCTCCCAGCATCGCGCGGACGGCATGCCCCTGGGGTTCGCACTTTCGGGTGGATCGGACCGCTGCGCTTGCGTGACGCGGATTCCTGCGTCTTGCGTGGCGGGTGAGCTGGAAGTGGTCCCGCGAGCGGTCCGGTTCCGATGTCCGCAGGCGTAACCGCTCGCATAAAGTCTGTGCAGGTCAACCGGTCAGCGGGATAAGCTAAGATCGACACGGTCGGCTGGAGCGATCTCCATCGGCCGCCGCTCGCGATGATCTTTGAAAACCCAGGTCAGAGGCCTCGTCTTCGGGATGCC # Right flank : CACGGCGACACTGGCCACGAACAGCACGGTGGACAGCGGCCGGCCGGTTCTCCGGGCGGGTGGCTGTTCGTATCCGACGATGTCTCCATCGTCGGATACCGGGCGGTGGAAAGCTGTTGCGCGGCAAGCGTTCAAGCGCGTGCGGGCACCGTGGTCCGCACCTCAACCCCGCACTTCTCCGCCGCCCGAAGTTCCTTGCGCGACACCGCGTCATCGGTGATCAGGGTCTGATATCCGCTCAGATCCCCATGCGCGTACGTAGCCGTGCGGCCGAACTTGCCGCCGTCGACGGCCAGGATCGAGCGGCCGGCGGCGGCCACGAAGCCTTCCTTGTTCTCCGCGTACTCCCGCACCGGGTGGGACAACCCGCCATTGTGGACACACGTGGCGGTCAGGAATGCGACGTCCACGCGGAAGCGGTCGAGCTGGCGCAGTACCTCGGGTCCCGCGCAGGACTCGAATTCCGGGTGGACGCGGTCGCCGAGCAGCGTGACGGTCGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCTCCTCGAGCCGGTCCCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.70,-13.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //