Array 1 2-269 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDK01000164.1 Acinetobacter baumannii strain ABBL030 contig-5000058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 62 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 122 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 182 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 242 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : AG # Right flank : | # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-509 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDK01000197.1 Acinetobacter baumannii strain ABBL030 contig-76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 61 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 121 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 181 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 241 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 301 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 361 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 421 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 481 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 9 29 96.2 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1823 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDK01000198.1 Acinetobacter baumannii strain ABBL030 contig-77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 61 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 121 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 181 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 241 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 301 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 361 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 421 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 481 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 541 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 601 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 661 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 721 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 781 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 841 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 901 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 961 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 1021 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 1081 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 1141 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 1201 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 1261 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1321 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1381 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1441 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1501 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1561 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1621 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1676 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1736 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1797 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 450-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDK01000163.1 Acinetobacter baumannii strain ABBL030 contig-5000054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 449 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 389 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 329 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 269 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 209 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 149 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 89 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5540-6769 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDK01000163.1 Acinetobacter baumannii strain ABBL030 contig-5000054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5540 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 5600 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 5660 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 5720 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 5780 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 5840 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 5900 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 5960 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 6020 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 6080 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 6140 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 6200 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 6260 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 6320 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 6380 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 6440 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 6500 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 6562 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 6622 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 6682 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 6742 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 21 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //