Array 1 117508-119280 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYP01000001.1 Ligilactobacillus ruminis strain PEL65 NODE_1_length_160641_cov_116.608_ID_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 117508 33 100.0 34 ................................. ATTCTAATCCTTGTCCTCATTGTCAACCGTGAGA 117575 33 100.0 33 ................................. AAGCAACAATAAAGCTCATGCAACAAGCAATGC 117641 33 100.0 34 ................................. AGACAGATTGCGAGTTTTTCTGCGTTAGGCACAC 117708 33 100.0 33 ................................. AGCATTGGGAACACGTGGTGCAATTGCAATTCC 117774 33 100.0 33 ................................. GTAGATGTTGCAAGTTATCAGAATGATGCGCTT 117840 33 100.0 33 ................................. GCAACTTGCATGACATCATTAATTGACGTCATA 117906 33 100.0 35 ................................. ACTAAAGTGAGTGCTGTCGGTTACATATTGTAATT 117974 33 100.0 33 ................................. TTTACTACTCTTTTATTATATAACGTCACAAGC 118040 33 100.0 32 ................................. AATATGGTACAAATCGTTCTGACTTCGCCAGT 118105 33 100.0 35 ................................. AATCCTAACCGCAACTTTTTCTATTTTAATGGTTA 118173 33 100.0 33 ................................. AATTTCCAAGCCGACAATTGATGAACTTAATCA 118239 33 100.0 36 ................................. CCCTTTTTCACCAGCTGGACCAACGTCACCTTGAGG 118308 33 100.0 34 ................................. GGCATTGTTTCTAACTTTAGTAAGTGTTGTTTGT 118375 33 100.0 33 ................................. TTAAAACAAGTTATGAAAATGAGTTGACATCAC 118441 33 100.0 33 ................................. AACGGTCAGACTGTTGCAAGTCATTCAGGTAAC 118507 33 100.0 34 ................................. GTTTAGAAAATACTTACACTCGCACTCACTATCT 118574 33 100.0 34 ................................. ATCAACTCCAAGTGTTGTCAGATCAACATTAAGT 118641 33 100.0 36 ................................. ATTACTGTATACACTTTGAACTTTTGACCTGCCAAT 118710 33 100.0 36 ................................. AGCCCTTGGAAAACGTGGGCATCAAGGAAGTGCAGG 118779 33 100.0 35 ................................. GTTGATCATTGACGACACTCAAAAGGATATTCCGG 118847 33 100.0 33 ................................. GTTTTAATAAGCTCCTCTAATTACAGTCGGACA 118913 33 100.0 33 ................................. ATATTCTTTGTTACCCATAACACCATTAATGAC 118979 33 100.0 35 ................................. TCGCTTGTCAACATAGCCACGGTCAATATCTTCTT 119047 33 100.0 35 ................................. ATATGATGAGAGCAAGAGATTGCTCAACAATATTG 119115 33 100.0 33 ................................. ACGAAAAACATCTCACGTTACATGATACTCAAA 119181 33 100.0 34 ................................. AGTAATAATTTTGTAAAAGAAAAAAGTTGCATGA 119248 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 27 33 100.0 34 GTCGCCCTCTGTATAGGGGGCGTGAGTTGAAAT # Left flank : GGATGAGTATCCACCTTTTTTCTGGAAGTAGGTGAAGTTAGTTATGCTTATTTTAATAGCATATGATGTTAGTACTGAAACATCGGCTGGTAGAAAACGACTAAGAAAGGTAGCAAAAGAGTGCGTTAATTACGGTCAAAGGGTTCAAAATTCTGTTTTTGAATGTCAATTAAATTCTACAGAATATCGACAAGTTAAGGCTACTTTAGAAGGTATTATAAATAAAGATGAAGATAGTTTGCGTTTCTATAATTTGGGTGATAAGTACAAAAACAAGATAGAACACATTGGAATTAAAGAAAGTTTTGATATCAAAGGTACGCTTATTTTATAACAAAATATTTGCGAATCAAAAGTGAACATATTTTTTCGAAGTATTCGCACCTTGTTTTTAATGATTGCCGAATAATATTCATAATATATTTCTTAATCTTCGGTTGTAAGGATTATAGTTATTTATTATGATGCGAAAAATTGGGCTATATTGCCTGTTTTTTGCT # Right flank : TAGCTGAATGTCATATCAATGATGTTATGAATAGTAGCAAGGTTGGAAAAAAATGTATTTTCAGCAAAAAAACCGGATGATTCGAAATTAGTTTGTGAACATCATCCGGTTTTTACTTATATATGAACCAACGTAAGTGTTTTTATAAACCTCAGATATACTTGATGTTTAAATCATATCAAGATATCAGAGGCTTAAACGCTTATTTCCGCTTACGATTAAAATCAAATTGATGATACTAAATCTGTAAATGTTATCTGAATGTGTCCGTCACAGAATGTATGAAGCATAAAAATTAAGTCATATCAATAGAATACCGAACAAATCATCCGCAAGTTGACCGACTTTGTCCGGCATTAATTTAGTTTGAAAATAGAACGGAACTTTCCAGACCTCTCTTTCTTATGTTCTACCATTATCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCGACTGACGAACCCGTAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTATAGGGGGCGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 136333-135341 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYP01000001.1 Ligilactobacillus ruminis strain PEL65 NODE_1_length_160641_cov_116.608_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 136332 36 86.1 39 A.....A.T.TT........................ GGTATCATATACCATACCAACGCCGGAAGAAACAATCGA C,A,G [136323,136327,136329] 136254 36 100.0 39 .................................... CGGATCGTACATGATGAATAATGGAGGCGCAAGAAAATA 136179 36 100.0 36 .................................... AATTGTTGAGATCGATTTTGATATTACGGAGTTTTT 136107 36 100.0 37 .................................... GAAGAATTAGGTGGTATCGAGCCCGAAGACGGCAAAC 136034 36 100.0 38 .................................... ATTTGCATTGAAATTAGTTCTTTTTGTTTTGTTACTTA 135960 36 100.0 39 .................................... ACGGAGTACGAACATGAATACCAAACAAACAAGTATTCA 135885 36 100.0 39 .................................... GACTTATTGGCTATGAGGATATTTTAGTGGAGCTTAAAG 135810 36 100.0 37 .................................... TATATTGATTGTGATAAAATATTTAAAGGTCGCTCGC 135737 36 100.0 36 .................................... GAAAAAGCAATCATTATCAATGAACACAATAAGGGC 135665 36 100.0 37 .................................... GTTTAGCTACATTGTACCTAATTTTTGGGTATTGACA 135592 36 100.0 38 .................................... AAGACGATCAACCATAAAGAAATATTGAGCATAATCTC 135518 36 100.0 35 .................................... AATTTGTCGGAAACGTTGTATCGCAAGAAAAACGG 135447 36 100.0 35 .................................... ATAGACAAAAGGAATTAGATAATAGTAAGTTATTA 135376 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 99.0 37 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Left flank : GATCGGTCTTACCGCAAACGAGATAGATTTTCATATTATTTATATTTGAAAACATTTTGATCACGATACCAAAGATAGTTGTTCAAATTTTTGAGAATCTCTCTTAAAGCTCCATTGTAAATTCGAATTTCAACATCTTCCGTAATAATTTTCGCAGCCATTTCCCTAACTGGACGGTATGTTTCTTTAGGGCTTCGGTCAACAAGGTTGACTCCCGCGACGTCATCCAATTTCATATTTAAACCTCCGATTATACTTGATGTTTAAAGCATGCCAAGATATCGGAGGTTTATGAAGAACGCTTATTTAAAGACCGCTTACGATGGGGCGAATATCAGTATCCTCTTTTTATATACGGAAAACGCACCTGTCGGATTCAAGTGCGTTTAGCATTGACGAACATATTGACTGCGTCTCATCTTTTCATCTTGGTTGTAGCACGAAAAACTCTGCTATACAAAAGCTTGCTTTAAATAACAGAATTATCCCGTATTTTTTAC # Right flank : CGACGCATCCAAAAACACCATAACAACGGCATTTTCATCCTGTCCAAGCCGCCCGGAACCCGGGCGAGACGTACCTAAATGGAACAGCACCGCCCAATTTGACGGCAGTACATCGTACCAATGCATCGAACATCTATATTTTATCCTATTTTTTATGAATATGCAACCCAGTCTCGAATTTTCAGTCAGTTCGCCCCTTGCATGTTGCCTTGACAATAATCAAAAGAGGCTGGAAAAAACTCCTTCTTCACTCCTGAATTAAATGAAATGCCGAACAAAGGCGTCGTAATTCGACTGATTTTGTCCGGCATTCTTTCAATTTTAAGACATGAAAACCCGCTTTTCTATAAAATACAGAACTGCGAATCTCCTTCTCAATCAGGGCTCCAAGGAGGGATTACGGGCAAATTGCCGATTTCTTAAGATTTGATCGTAAATTCCAGTCTTCTACGAAGAATTATCCCGAATACACAAAGTCCCGGATGAAATTTGCAGTTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 61-224 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYP01000058.1 Ligilactobacillus ruminis strain PEL65 NODE_59_length_876_cov_1.01736_ID_117, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 61 30 100.0 36 .............................. ATATTCATTTTTGCATTGGCTCTCGTATTAGCCAGT 127 30 100.0 38 .............................. GTCAATAGATTTTAAACAAAAAAGTTCCCGTCAGATAC 195 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 ATTTACATTCCTCATCAGTTAGATAAAAAC # Left flank : ATTCCTCATCAGTTAGATAAAAACTGCACCCATTTCAGAGCGGTTTACTCAAAAGGTAAAA # Right flank : CTCCATAGTTTGAAAATACTAACACCACTATATATCTTAAGCGTATTTCTGTCAATGCAATAAAAATTTGAAGCTTATTTGATATATAATATGCTCGAACATCAGTAGATGCTTTCGTATCAGTAATTATAGAATCTGTCGAAACACCGTAATAATTTATTTATTACACATAGACAGATATATTAGAAGAAATTTGAAGTATCTGCGGATGTGTCCATACCCCAAAACTCTTTGATCAACCATTTGTTACTTCTGCTTTTAAAAATAATTATTGAATCTAAATCTTTATCTATCCATTTAGACAATTCTGATTTTAATTTATTTAATTTTGCAACTGTTAGTTCTCCCTCAAAAACAGAGTTCTGGATATGAGTAAGATATTTTTTACATATTTTAAAAACTCTTCTCATACGCCTGGACCCATTATTTTCAACACTTATATCATAAACTAAAATTACATACAACTTATCACCACCAAATTTTAAAAGGAGAATATTCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCATCAGTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //