Array 1 475113-477417 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNJ01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N51273 N51273_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 475113 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 475174 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 475235 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 475296 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 475357 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 475418 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 475479 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 475540 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 475601 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 475662 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 475723 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 475784 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 475845 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 475906 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 475967 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 476028 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 476089 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 476150 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 476211 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 476272 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 476333 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 476394 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 476455 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 476516 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 476577 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 476638 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 476699 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 476760 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 476821 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 476882 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 476943 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 477004 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 477083 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 477144 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 477205 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 477266 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 477327 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 477388 29 96.6 0 ............T................ | A [477415] ========== ====== ====== ====== ============================= ================================================== ================== 38 29 98.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //