Array 1 88577-89539 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHDT01000001.1 Staphylococcus microti strain NCTC13832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 88577 36 100.0 36 .................................... AAATTTTGTCAAAGAAATGGAAAAGGAAATTCTAAA 88649 36 100.0 38 .................................... CATTTCTTCTAAAAAGATATTTTTAAGTCATGGCCTAG 88723 36 100.0 32 .................................... TCCTATACTTTAAACTTAAAAACAAAACTGTA 88791 36 100.0 34 .................................... AATAATATGAATAACATTATAGATAGTATTTTAG 88861 36 100.0 34 .................................... TGTAAAAAGAATGTTTCTGTTGAATTTAGTAAAT 88931 36 100.0 36 .................................... ACGTTTGTTTTTTAATTGCTTTTGATATTCTTTATT 89003 36 100.0 36 .................................... TATCTTATGAAATTATTTATTCAATAGCTTTATATG 89075 36 100.0 36 .................................... CGATTTTTCCGCCGTCTTTATAAATGAACCAAACAT 89147 36 100.0 35 .................................... TTTAAGTTGGTTGTTTTTCATTCAAAAACTTGTTG 89218 36 94.4 34 ...........C..........A............. TCATAATTAATGAAATCGAGTGGATTTATTACAT 89288 36 100.0 38 .................................... TCTGATAAATTCAAGAAATGCTGTTTTTGGATCTTGTT 89362 36 100.0 36 .................................... TAATTAGATGGTTTAATATAATCTAAAGAAAGCCAC 89434 36 94.4 34 ...........C..........A............. CCGAATCCCATTAATAAAAAGTTGTCTAGTCGAT 89504 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.2 35 AATAGAGAAGAACCCCATCAAATAGGGGACGAGAAC # Left flank : ATCAATTTCTAATTCAAAACAACTATAACTTGCCATCATGATGCTCCTCTCTATATATAAGCATTTAATAGAATATGGTAGTTTATAATGAAATTATACAACTAAATCACTAAATATGTTAATCATCAAAAATTTTTAGTGTTTATATTAATAGAGAAGTGGTTGAATCTAGACGAATTACATCAGTGAATCTGTGGATTTATGGGTATTTATAGCTAGGGTCTTAAAATATTTGAGAAAGTTATGAGTCAATGGACATAGGCAGAACAGTTCGAATGACATATAGAAGGATTCTATTATTTTCATTAATTATCAGTTATAATACTAGAGATAATAAGTTTTAGTGATTTCTTTATATTTAAAGTGAATTAACGAGAAATCACTCTATTATTTGCCCATATTCAAGACAAATAGTAGAATAACTGAGAGCAATTGGCCGTTAATTAAGACAATGAATAATGGCCTGAAGCATTGAAACTATAGGATTAGTAGTATTATCA # Right flank : CTCGAACATTGGTTCCATCGAGTCGCCATTGACTTGTAAATAGAGAAGGGGCTGGGACATAAGGAAAATCATCCTAAATAATTAGGGAAAAAGCACTAATTGGCAGTAGGTGTCTGAAGTGAAAATATGTTTAAAAAACTTTTTATACTTCTAGTCACCCTTGCTGGGGCGAGACGACGAAAGCTTTTTGTAACAATAAGCTTTCTGTCCCGCTCCCTAAGACATCTTTAAACCTTCTAATACCATGTTTTGTATTGAATCAGATGATACAGAGAGGAAAATGTTAACAGTGATTAAAAAACGCTTCCAAAAAGTTTGGATATTTTATAAAATAAAGGGGTAGATTGCTTTAATAGGGTGAATGGAGGAAATGAATGAAAGATATTCTTTACGTTGAGCATCCATATTTTGTTACTGCTAAAGAGGATAGTGTGAAATTTAAAAATATAAGAGATAAGTCTCTTAAATATTTTTTGTTCAGTGAAATAGAAGCAATAATA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAGAAGAACCCCATCAAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1061121-1060060 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHDT01000001.1 Staphylococcus microti strain NCTC13832, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================================================================================================== ================== 1061120 33 84.8 138 .............A.............TTG.A. AAATAAGGTAGGAAAACGGCAATTAAAGTTGTTGTTTCCTACCTTGTATTTTTTATCAATCATATGCTGTTTTATCTCCATTTAGATCAGTTTATACTGATGCTTTATTTAATGACTTAAGTTATAATTGTTCTAGAG 1060949 33 100.0 33 ................................. TACGTACAAATGAGACAGTTTACGCTTATAAAT 1060883 33 100.0 33 ................................. TACTTCAATGTTGGTTTATCTGGAACACTCGCT 1060817 33 100.0 33 ................................. TACTATTTATGTTCTTATACTGATATCAAAATT 1060751 33 100.0 33 ................................. TACATCCGACCGACAAAACCAAAGACTAACGAC 1060685 33 100.0 33 ................................. TACTTGAATAACCCGATGGGTCATCATCAGCTT 1060619 33 100.0 33 ................................. TACCCATTTAACTGTCGTATCAAACGTGTTTGG 1060553 33 100.0 32 ................................. TACTGATAATCGTGGTGGTAATTTTAAATATA 1060488 33 100.0 33 ................................. TACTCATGTTTTTAGGGTCGTTTGCTGCACCAA 1060422 33 100.0 33 ................................. TACATCGTTGGAGAATCATCCATTTAAACGAGT 1060356 33 100.0 33 ................................. TACTGAAGCCCCCAATAAAAGAGTGGGAGCGTC 1060290 33 100.0 33 ................................. TACATTTTTAGTATTTTAATTGGTCGCATGAGT 1060224 33 100.0 33 ................................. TACTTATTTTCATAGGAATCTATGACATAAATA 1060158 33 97.0 33 .....................T........... TACGAACTACTTGAAATGTATTATGAGTGGGCG 1060092 33 90.9 0 .....................T.....A..C.. | ========== ====== ====== ====== ================================= ========================================================================================================================================== ================== 15 33 98.2 40 GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Left flank : AATTTTAAACTTAAGCATAATTCATGATGATGCACAAAATTCAGGAGCAAAGAAACGCTAAAACACCACCTATTCTATTGAACTCAGAATTAATGATTTTGTCAGTAATCTGTTTTGCTCCTTTAATTTATCAATTTCTTCATTTAAAACATGTACTTCTTGTTGCATTATTAAGCCATAAAATTTTTGATTGGCTAATTCAGACTCATTTTTAAATTCTGATTGCTTTGTATCCACTTTTGTTAAGTAACTGACCATGCTTTTAAATTCATACATTAATAGTTCTTTTTGTTTTACCATTTATTAAACCACCTTCGCTTATTAGTAAAATGTAGTAACGAAATAAAAATCCCTACTTATACCTATTTTTATAAAATTATAAACTTTAATTCAAACATTGACAAGCTTTATTCTATAAATTTCGTATGTGCATTAATTGAACTTATGTTATATACTGAGACTCATAGTCTGATAAACACCATTGATTATCAGGTATAAGT # Right flank : TACTCAAAGTCCGTCGATAACCAACCATCCAATTCAAACACTATATAACCCAACGAACCCCCACCTAACACTAACTCGTCAGATGGGGGTTCGTTTTCTCTATTTACAATGTAATAAGTCCTTCTTTAATCATTTCTTCAACGGCACGTGTGACGGCAAGTTTGACATGTTCGTATGTGAGACCACCTTGAACGTATACTTCATATGGTTCACGTATTGGGCCGTCTGCTGATAATTCAATAGATGCCCCTTGAACAAAGGTACCTGCTGCCATAATAACGTCATCTTCATAACCTGGCATATAGCTTGGTTCTGGGCTGAAGTGTGCGTTAATTGGCGATGCATGTTGAACGCTTTGACAGAATTTGATCATCTGCTCTGCATTTTCAAATGATACGGTTTGAATCAAGTCTGTACGTGGCGTATCAAAACTTGGTGTTGTTTGCATGTTACAACGTACGAGTAATAAGCTTGTGAACAATGCGCCTTTTAAACTTTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 1065895-1066785 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHDT01000001.1 Staphylococcus microti strain NCTC13832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1065895 33 100.0 33 ................................. TACCAAGTAGCGTTGATTCATGCAATGCATAGA 1065961 33 100.0 33 ................................. TACTTTTTTATTGTTCCACCACGTAGCTTTTGA 1066027 33 100.0 33 ................................. TACCGTCACAAAAGCGGATTGATTCATTGGCAT 1066093 33 100.0 33 ................................. TACCTTCATGCTCTACCTCAACTTCTTTGGCAT 1066159 33 100.0 33 ................................. TACTAACAGAACAGCAACAACATGATGTTTTTG 1066225 33 100.0 33 ................................. TACACCAGAAGAACCAAGTAAACCAGGTAAACC 1066291 33 100.0 33 ................................. TACCGAATACAGCCCTTAATGCTTCTCTCACTT 1066357 33 100.0 33 ................................. TACTGGCAGCGGTAGCTACTACAGTGGATGCAA 1066423 33 100.0 33 ................................. TACAATTTGTGAGAAATATGTAATCCAAAATGT 1066489 33 100.0 33 ................................. TACTTATCAGTCCACACTTCACTAAATTTAACA 1066555 33 100.0 33 ................................. TACAAATCGTTTATCATAGCTTTTTTAGGTTGT 1066621 33 100.0 33 ................................. TACCAATAAAGAAGAAAAGGATGACCCGACAAC 1066687 33 100.0 33 ................................. TACAAGCAAACCTTTAACAATGTAATTTAGTTC 1066753 33 90.9 0 ...........................AG...G | ========== ====== ====== ====== ================================= ================================= ================== 14 33 99.4 33 GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Left flank : TCGTTTTGTGACGCAATTACAATATAAGGCTGATTGGTACGGACGGAAAATCATTAAGGTAGACAAATGGTTTCCATCTAGTCAAATCTGTTCAAAATGTGGGCACAAAGACGGCAAGAAATCTCTTGAAATCCGAGAATGGACTTGTCCTGTTTGTCGTACACATCATGATCGAGATATCAATGCCAGTATAAATATATTGACGGAAGGTCTAAGAATAATGGCATTAGCTTAAGTAGCATAAAGAACCGTAGGAACTACGGGGATAGCTTGGTAAATAAGAGACACCGCTGTTAGTAAAGCAATAAACTAGCAAGTACGCTCTATTCCCAAGAAGCTCCCACTTCAAGCGTTAAAAACTTTAGGTTTAGCTAAGTGGTGAGTAGTTCACAACCAACTAAAGAAGTCGAAATGGCAAAATACTATTTAATGTTTCAATCGCAAATGTTCAATATTGTTAGATGAAAATCAAAAAAACTTAAGGTATAATGTTGCTAGAG # Right flank : GCACCAACTTCATTGTTGTAGATGTGTTTGAATGGCTAATGAGAGTGTATATTAAAAAATGTAATCATACGATTTGTGATGTGAAAATATAGATTAAGTCAAAATCTTACGAAGTTACAATACATAATCATAGACTCAATTGATGTAAATTTACATTTAATTTGGAGTGGTAAAGAAATTTATTGGTTGTAGTGTGAATAGGGTTTGTTCAGTAACATAAGTTATAAAGACCTAATTATAAAAGTGAAAGTTCTTTATATCAAGTGAGGAACCTATTTTACACCACCCAAAGAAAAAGTGGAATAAAATGTATGTAAAATATTTAGACAAGAAAATAAAAATTGTTGACATTGACAATCAGATATTTATTGGAGTGCTTGAAGATATTCAGAGAGATTATGATGCAGAAGAGTATACTGAAGAGCTAAGTGTCTTATTAGACAATGGTGTGCTTCTTGGTATTACATCTAATGAAATTAAATCAGTCAAAGTAATTTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //