Array 1 145311-144219 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CDEQ01000003.1 Streptococcus agalactiae strain Bangui-IP-105, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    145310	    36	 100.0	    30	....................................	AACCATGGTGATATTAAAATAATTTCTTTT	
    145244	    36	 100.0	    30	....................................	ACACCGTCATCATCCAGAGCAAAGAAATTG	
    145178	    36	 100.0	    30	....................................	TATTCTTGAAAAAAACAGAGATCCTCGTAA	
    145112	    36	 100.0	    30	....................................	ATTAAAACCTCCCATTATAGCTCTACCCGC	
    145046	    36	 100.0	    30	....................................	ACAACAATATTGTCAATAAGTACCAACCCG	
    144980	    36	 100.0	    30	....................................	TAATAACTAAAAATTCCACGCTTGATTTAG	
    144914	    36	 100.0	    30	....................................	CCAAATTTTGAAGAGAAAAAACTAAAAACT	
    144848	    36	 100.0	    30	....................................	CAAAGAACTTTGTGTCTCAATTTGTGAGCT	
    144782	    36	 100.0	    30	....................................	ATCACTTCTTTCGCTTCTTCAATATTCATT	
    144716	    36	 100.0	    30	....................................	TCTTGATAATGAATTTGAGTCAGCAATACA	
    144650	    36	 100.0	    30	....................................	TAGATTTCTACGAACAAGTGGATTGAGAAA	
    144584	    36	 100.0	    30	....................................	TCAGTCAGTTAAAGACACCGTTATTAATAA	
    144518	    36	 100.0	    30	....................................	AGGTCCTATGGGGAGAAAATTAAAAGTGGT	
    144452	    36	 100.0	    30	....................................	AACTGATAATCTTAAAAAAGTAAATGTGAC	
    144386	    36	 100.0	    30	....................................	TTGACCTTTTACGTTAACAGTCCATTTTGA	
    144320	    36	 100.0	    30	....................................	AACCTCATTATTAAATTTCACTACTACTGC	
    144254	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  TCTTTTAAAGCAGTTGATATCAAGACATCTGTTTTAGAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGATGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCGTTAATACTTGCAAGCTTACAAGGGAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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