Array 1 1180463-1179980 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKPL01000013.1 Listeria monocytogenes strain NRRL B-33804 PROKKA_contig000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1180462 29 100.0 34 ............................. TAGAGAGTTTAACACTACTTGGGATGGTAACTAC 1180399 29 100.0 36 ............................. AAGGCCGCAGACTTGGAGAAAGTTGCGACGTTTTTC 1180334 29 100.0 36 ............................. GAAGCCTTACTAGTTGAATTATTGCCGCCGGAAGAT 1180269 29 96.6 36 ................G............ GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT 1180204 29 96.6 35 ................G............ TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 1180140 29 93.1 37 A...............G............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 1180074 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [1180050] 1180008 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 92.7 36 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : TTAAACCGTAAACCAAGACCACATGAAGACGAAATTATGAGTGTCATTGGTGATGTGAAAGGCAAAGTCGCAATCGTTGTCGATGATATTATCGATACCGGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTCTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6863-5636 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKPL01000003.1 Listeria monocytogenes strain NRRL B-33804 PROKKA_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6862 36 100.0 30 .................................... CATTCGAGTTATTACAAGTGTTCTGTTTGG 6796 36 100.0 30 .................................... AGCAATTGCTGCGGGATCAGTTGCAGTAAT 6730 36 100.0 30 .................................... TCGTATATCAGATACTTGGCATATCCCACA 6664 36 100.0 30 .................................... AATGAGCTTGGAAAAACGTTCATACTAACC 6598 36 100.0 30 .................................... TGAACCATTGCTGATTGTAACAACAACCGC 6532 36 100.0 30 .................................... GAACCTTGAGGAGCAAATTCAAGCGGGTTC 6466 36 100.0 31 .................................... CTAGAAGAAGCAACGAACTTACAAGTGCGAT 6399 36 100.0 30 .................................... TAAATATAGACTGAAATATGTATCATTTGT 6333 36 100.0 30 .................................... AAGTCTAATTGGGAACGCCACCCGATTGCT 6267 36 100.0 30 .................................... CGGGTCTTTTTTGATCACTTCACTGAACAT 6201 36 100.0 30 .................................... TAATACAAGTTGAAATGGATCGCATCGATG 6135 36 100.0 30 .................................... TATCTCTCAATTGGTTCATGATAATTGCTT 6069 36 100.0 30 .................................... AATACAAACGCAAGAACAATCCATCAGTAG 6003 36 100.0 30 .................................... TCGATCTATCGGACGTGTCGACATTATCGC 5937 36 100.0 30 .................................... GATTACTGTTGCAGCTATTAATGTCAAAGT 5871 36 100.0 30 .................................... ATGCACTATCCGCTTTTGCTTGTGATCCCG 5805 36 100.0 30 .................................... TATCACTGCCGAGCTTGGTGATGTGAAGAG 5739 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 5673 36 77.8 0 ............CA.....C.....A.A....T.GA | A,T [5640,5645] ========== ====== ====== ====== ==================================== =============================== ================== 19 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACAGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACCGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTTGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGGTGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATTCGAATTTTGAAATGAATGTTGACCAAGAAAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTCGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATCTTATATGATTATATTCTAAATGCGAGTAAAAATAGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACACTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //