Array 1 117389-118207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTU010000003.1 Campylobacter concisus isolate 2009-91522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 117389 30 100.0 36 .............................. AGCCTAGATTGAATGATAATGATAAAGACGAAGATA 117455 30 100.0 36 .............................. AAACTGCCATTGATGATAGCTTTAGTTTTGTTAATG 117521 30 100.0 35 .............................. AAAGTAATATTTCGATATTCTAAGGCAGATAAACT 117586 30 100.0 36 .............................. AGTTTTTTTCAGGATATGAGTAAAATTGCGGACGAG 117652 30 100.0 36 .............................. GCTTTCCACTCGTTTTCTTCGCCCTCGAGCAAAGAG 117718 30 100.0 36 .............................. TATGAATAAAATCGTCTTCACGTCCAAGCGCTGCAA 117784 30 100.0 36 .............................. ATAATCCCAGTGGCTACGTGATGAAATATATTCAAA 117850 30 100.0 36 .............................. GCGTGATCGTGCTTAGGATATACTCATCATCGTATA 117916 30 100.0 35 .............................. ATAGCATTAATAGGCAAAGGGATCATAAATCCGCC 117981 30 100.0 35 .............................. GCTCTTTATGCTTTGGATTAATTTCACTTTCTTTT 118046 30 100.0 37 .............................. ATAGCGTAAGCTCGGTCTTTTATATAGGTTTTTTGAA 118113 30 100.0 35 .............................. GGCATCGTGTTGATGAAGATCCAAATAAAGATAAA 118178 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTTCACCTCGACCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACATGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAGGCAAACAAGCTTAAAAAGTGTATCTGCGAGGATGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATCACATTTTAATAAAGCGTTTTTTAAGATTTTAAAATGCTTGAAATTTAGGGCTTGGTGTATTTACACATAGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACCTAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : CAACGCATAAGCGACAAATTTAAAAGTCAAAAATTTTCAAAAAAGAGATTTAAAATAATAGATCAAATAAATAATAGTTGCTATCTTGCAAAGATGTATCAAACGAACGATAATATTGTTTTATATAGATACTTCAAAAAGCCAAAACCCCAGCCAATACAGCAAAAAAACAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACCAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 5675-4876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTU010000008.1 Campylobacter concisus isolate 2009-91522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5674 37 100.0 37 ..................................... TTTGTCAAAAGCTCGATAAGTCTCTCATTTAGGTTCG 5600 37 100.0 36 ..................................... ACTCGGTAAGGCATGAACCTCTCACGATCAGTATCG 5527 37 97.3 40 ....................T................ CATTTTCTTGCTCTTAGAAAAATCACGATAGGGCATAAAA 5450 37 100.0 39 ..................................... GACTTGTTTGTCTCCCTTAGAGACAATGTTATAGAAAGG 5374 37 100.0 39 ..................................... AAAATCTTCATTCCATTCGCGAGAAAAAAATCTCACGGT 5298 37 100.0 39 ..................................... AAAATCTTCATTCCATTCGCGAGAAAAAAATCTCACGGT 5222 37 100.0 39 ..................................... AGTTCGATGTCTTCTGTAAACATTCCCATTGTTTATCTA 5146 37 97.3 36 ......................A.............. TTCCAATCTTTTTCTTTAATAAATTTGAGAGCTTCA 5073 37 100.0 42 ..................................... TGTTTTCGTAGACTTTTCTTTCGTCCATACCTTTGATACCGA 4994 37 97.3 42 ......................A.............. TGATTTGTTACGTTTCTATCTGCAATAATGGGAGCTTCAAGC 4915 37 97.3 0 ....................................T | AA,C [4881,4884] ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 99.0 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : | # Right flank : TTGGTAAAGTTGTAGGTAGTGGCTTATATTATTATTTGTAAAAATAAATGAGTGATGCTTATATGCGTTTATTGGATAAATTTGGATAAGAACAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGACTAGCACGAGCAGATGAGTAAGATCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCCTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATATAAAGGATAAAGTAATGGACGCACAAACCAGGATACTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATAAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1238-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTU010000005.1 Campylobacter concisus isolate 2009-91522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1237 37 100.0 42 ..................................... GCATCTATGCTGTGTATCGTAGATGGCATAAGAGATCTATGT 1158 37 100.0 38 ..................................... GAGCTAGCAACATATTCTCAATGCTCTCTGCTTCTTCG 1083 37 100.0 37 ..................................... GACTTGAAATCTAAAGGCTTGATGCCTTTTTCTGCTT 1009 37 100.0 39 ..................................... GACATAGGTCTATTAGCTAATGGGTTATATCCCACAGCT 933 37 100.0 40 ..................................... AGAATAATCTGCGATAGCTTCTCCATCGCAACTATGTACT 856 37 100.0 38 ..................................... ATTCGGCAACTAGAATCTCTTCGTCAAAGCCTAAGCTT 781 37 100.0 35 ..................................... CAAAGACCCATAATAAATATCATTAGTAAGCTCAG 709 37 100.0 39 ..................................... GAACACTAGGTTCCAACTCGAAGAATGCTGGCGCAAAGC 633 37 100.0 38 ..................................... ACGTCGTTCTGAAAAGCTAAAAGTTCTATTTGCATGTT 558 37 100.0 39 ..................................... GAACACTAGGTTCCAACTCGAAGAATGCTGGCGCAAAGC 482 37 100.0 36 ..................................... CAATTAAGGGTAGCAACATTACCGTGTCTGATGGCT 409 37 100.0 40 ..................................... GTAGAGTAAATCCATAGCTAACTGAGTATTTGAGATCAGA 332 37 97.3 35 G.................................... GTTGCTGTGGAGCTGCTTGGCGTTGTTGAGCTGCT 260 37 100.0 38 ..................................... TACCTAATAGATTTACGTTGTTCATTTTTGATCCTTTT 185 37 100.0 39 ..................................... GAAATCTAATTTTTGCATTTATTATCCTTTTAAAAAAAA 109 37 97.3 34 ....................C................ TACTCTTAGATGTCATCAGCTTTCTTCGCTTCTA 38 37 97.3 0 ....................C................ | ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 99.5 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTACTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : CT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 4632-4221 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTU010000005.1 Campylobacter concisus isolate 2009-91522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4631 37 83.8 39 ..C.TGTT..........T.................. ATGTGTGCCACGTCGCTTTCGGCACACGCTAAGTCATGG A [4628] 4554 37 100.0 35 ..................................... ACGTTTAAAAATGCACGCTCAAAGCCATAATCATT 4482 37 100.0 36 ..................................... CCGTGATACTCATCGTAAAACTCTTTGTTAGCAGGC 4409 37 97.3 39 ..........T.......................... GCAATAATCCACTCCATAGTGTCTCCTTTTAATAAAGTT 4333 37 97.3 37 ......................T.............. AGTTTTAATGCACAAATTTCGCACCTTTTAATTTTTT 4259 37 89.2 0 ....................C..C.........CG.. | A,A [4226,4228] ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 94.6 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CACTTTTTAGCGCATACCCAAAGGCTCCTCGCACCTGCGAGCCGATAAAAAATGGCGGCTTTTGTGACGGTTCAAATTTCATTCTAAGCTCGGCATACCTCATCAAAACTCCTTATCTTCACATAGTCTAAAACCGCACCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTGGTAGTTTTATCAGCATGCCAAGACTATCTCTTGTCGCCCTTATATCGCTAGAAAAGGTCAAAATCATATTAGTTTCATTATTCACTTCAATGCTCAATTTTCAAATTATCTTATTATATATGATTTAAAGGCAAATGTTTATATTTTTTAGATTTTTATTTAAAAATTATTATTTTTTATATATTTGTGCATACCTTTATCGCTCTTATTTTTAGTTTAAATTTCTATCTTTTTGGCTAAAATTTAGAAAATTCGTGATTTTAAAGATATTTAAGATAGGTTCTTTTTACTT # Right flank : CCACACCACATTTAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGGTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTAGGTTTAGATGAGATCTCATATGCTGATTTTAAAAAGAACTTTGACGAAAACGCAGACCATCTCATACGCTCACTATTAAATGGCACCTACACGCCAGAGCCGCTAAGAAAGATAAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGATAAGTTAGTTCAAAGGGTTTTATACTCGGAGTTAAATCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCGCACAAATCCACCTACAAAGCCATAAACAGAGCCAGTAGCTTCATAAACGAAAATGACTGCTGGATACTAAAAGCCGACGTAAAAGACTTTTTCGAGTCGATAGACCACTCAAAGCTACTGCAAATTTTACAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 3 24667-28105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTU010000005.1 Campylobacter concisus isolate 2009-91522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================================== ================== 24667 33 100.0 46 ................................. TCGATTCTCTCTTTTGGGAGAGAAATTTTTTGAAAAATTAGTATTA 24746 33 100.0 46 ................................. ATGCCCAGTATTTACGGTCAATTAAGACCATTAAATAATATAATTA 24825 33 100.0 42 ................................. AAACTCCTAGGAGTAGAAATTCAAACACTGCCTGAGCTATTA 24900 33 100.0 40 ................................. GCTAGCACTACAGCAAGAACCGCCGTCATGACAAACATTA 24973 33 100.0 41 ................................. CACTAGCTTTGCCGTTTAGGTGGCGCACACTAACTCCATTA 25047 33 100.0 41 ................................. AGCTGTTATTTTAAATAGCTCAGAAAGTTTGCTGTAAATTA 25121 33 100.0 43 ................................. GATCAGCGCAGTATTGCCCATGATAAACACACCAAGCGAATTA 25197 33 100.0 44 ................................. ATGTTGTAGATATTGCAGACATATCTACTATCCCAACTAAATCT 25274 33 100.0 42 ................................. TTATGTATCTCTGAGAGTAAAGGTTGATAATAAACCTCATCT 25349 33 100.0 45 ................................. ATTGATAAGAACCATGCTGAAATAATCAGCATCATTCTCATATCT 25427 33 100.0 43 ................................. TTCACGATCAAAAAAATCTTATGGTGGAATTTGGGTTTAATCT 25503 33 100.0 63 ................................. AAAACCTGCCAATCAACTCCAAATTGAGCCCTCTAGCTTCAGCTGAAGCTAGATGATTCATCT 25599 33 100.0 45 ................................. AGCTCGATCCCGAGTACCTCAACAGCAAACTGCAACCCCCAATCT 25677 33 100.0 41 ................................. GTAAAATTCTCTTCTACGCTATCTTGTAGCTGAGCAAATCT 25751 33 100.0 41 ................................. ATTCTTACTTGTTTCTGTACAAGTTCTGGATTATTTAATCT 25825 33 100.0 44 ................................. ATTTCGTTTGCACTTTGTTTTTGTTGATTGAAAACATCATATCT 25902 33 100.0 54 ................................. TCTAAAAAGTCAAAGCTAGAATAGGCATTTAGTCTTAGGATTTGATCTGGATCC 25989 33 100.0 41 ................................. GCAATTTTTCCGAAGAATGTAATGTCTATAAACATTAATTA 26063 33 100.0 49 ................................. TTTAGGCTGTCCTTTACCTTGCTTATAACAGGCTCAAAGCCTTGTATCT 26145 33 100.0 39 ................................. ATTTTCTTGGTTGATCGCTTTCGCATGAATTTTTCATCT 26217 33 100.0 41 ................................. ACTTGAGCACCGTTATTGTTAGTGTATTTTCTACTAAATTA 26291 33 97.0 48 ............T.................... ACCCATTTACCTATACTAGGGTCATATTTGCCTGCTCTAGAGCTATCT 26372 33 97.0 41 ..................T.............. ATTTGTCCCTCTTCGTCAGGGTCACCGCAGTGAACAAATCT 26446 33 93.9 47 ..............A...T.............. TTATTTACGTTGTCAATTTCTCCAGCAGCAAAAGCTACACCTAATTA 26526 33 100.0 38 ................................. TGACCGAAACAAGCTCATATTTTTCGACTTCAACATCT 26597 33 93.9 44 ...........T...A................. ATCCATCCTTCCCACTCTTGGCTACCGTAGCCATCATAGTATTA 26674 33 100.0 47 ................................. ATGGCTTTCATAAGTTTTTGATCGATTTTTATTTGCATATTGCATCT 26754 33 100.0 45 ................................. ATGGGGTGTTCATTTTTACTCCTTCAAAAAAATAAAAACAGATTA 26832 33 100.0 43 ................................. ACACAATACAACGAGCGGCTATCCTTGAGCCTATACGCAATTA 26908 32 93.9 40 .......-..C...................... TAAGAAACACTGATGTCAAGAGCATTAGACATATCCATCT 26980 33 100.0 48 ................................. TATTTTTGTTCTGATGAGAGGCAATTCATAAAGTTCTCTTTTGTATCT 27061 33 93.9 47 .............T..................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 27141 33 97.0 47 ................................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 27221 33 100.0 38 ................................. TGACCGAAACAAGCTCATATTTTTCGACTTCAACATCT 27292 33 93.9 46 ...........T...A................. TATGCCTGCGGTCATCATATTTGATCCAGCCACCTTCAATATATTA 27371 33 100.0 42 ................................. CTTCAAGACCTTCACGGTCAACTTGAACGTCAAAGTAGATCT 27446 33 100.0 44 ................................. ATCCATCCTTCCCACTCTTGGCTACCGTAGCCATCATAGTATTA 27523 33 100.0 42 ................................. ACGGCACGTTCAGGAAGTGTGTTAAAAAAGCTCATAAGATTA 27598 33 100.0 41 ................................. AATTGTCCTGCCTGAAAATCAGTCCATTCGTCTTTGCATCC 27672 33 100.0 48 ................................. TATTTTTGTTCTGATGAGAGGCAATTCATAAAGTTCTCTTTTGTATCT 27753 33 97.0 47 .............T................... TTCATGATGAGTCCTACATTCTCCTCTTTACTAACAAGAACGCATTA 27833 33 97.0 47 ................................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 27913 33 100.0 47 ................................. TTCATGATGAGTCCTACATTCTCCTCTTTACTAACAAGAACGCATTA 27993 33 97.0 47 ................................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 28073 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= =============================================================== ================== 45 33 98.9 44 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTTCAAACATCTATTTAGATCAGATGGATAAATTCCTCGAACTTAGCGGCATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTAGCTCACGTGAAGCCTGCGAGCAAGGGCTTGCTAGGCTAAAGAACTTTTTAGCAACCATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGATAAGCATAGGCGAGGATAAATTTGCACGCATTTTAGCAAAACTCACATCCTCGTCCAAAAAGCCAGAGATCACCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATCGTTTTTTGGGCTATTA # Right flank : TAGACATATCTATCGAGCATAGTTCTCAAGCATTAATTCATAGATACATTTCATTTTAGCTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCGTCATTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //