Array 1 1661288-1660312 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023194.1 Bifidobacterium breve strain NRBB19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1661287 33 100.0 35 ................................. AACGCGTACGACAGGGAGACGAACCCGAAACCCGA 1661219 33 100.0 34 ................................. TGCACGACCGGGACATGAACGCCGCCCTGAACAT 1661152 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 1661086 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1661018 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1660952 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 1660885 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1660819 33 100.0 35 ................................. AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 1660751 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA 1660683 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 1660616 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 1660549 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 1660481 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1660413 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1660344 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.2 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACTCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGCCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACGTTCAACGCGT # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1671223-1668089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023194.1 Bifidobacterium breve strain NRBB19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1671222 33 100.0 34 ................................. CCAGAGCGAAGCACGGAAGGGTGCGCCCGCACTG 1671155 33 100.0 35 ................................. ATCACCCCGCCCGCCTCACTGGAATGCATGGAGAA 1671087 33 100.0 34 ................................. CATCGTATCCGGGGAACATCTGGACACCGAGCAT 1671020 33 100.0 35 ................................. CGGAAGAATATCGCTTGACCATCAAGGGCATGTTC 1670952 33 100.0 34 ................................. AAGACCTGCAAGCGGCGTCCGAAACTCCATTGTG 1670885 33 100.0 34 ................................. CTCCATTGGGCTGGATGATACATTGCATCATATC 1670818 33 100.0 33 ................................. ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC 1670752 33 100.0 35 ................................. AATTCAGCAACAGTCCCATTAAATCACATTAAAAC 1670684 33 100.0 33 ................................. AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC 1670618 33 100.0 34 ................................. TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT 1670551 33 100.0 33 ................................. AGATTAACGACCGAGGATACGGTCTGCCGATTG 1670485 33 100.0 34 ................................. CACGTGAAACAAATCGCAACCGGGGAACGTAAAC 1670418 33 100.0 33 ................................. CTCGTAACACAGGCCGGCTATCAAGGCCGATTG 1670352 33 100.0 35 ................................. CAGCGCTTCGGGCACGACGGATATTGATATGCCCG 1670284 33 100.0 37 ................................. CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA 1670214 33 100.0 35 ................................. ATAAACAATAATATACCCCACGGCAGTAAGCCGTG 1670146 33 100.0 34 ................................. CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG 1670079 33 100.0 34 ................................. TACAATGCCGTGAACAGCCTCTAAAAGCATTAAG 1670012 33 100.0 35 ................................. ATCATAATTATCACTGTTGCGCGGGGCCTCCATGA 1669944 33 100.0 33 ................................. ATACGACCCTTGCCGCCGCGCACCGTAGCCGCT 1669878 33 100.0 35 ................................. GCGTACTCGACGAACTGGTGGCACATGGCCTCGAA 1669810 33 100.0 35 ................................. GCCAACGCCGGCATGATCGGCAGCGACGCGGGCAG 1669742 33 100.0 33 ................................. TTCCACGAGACCGGCCACATGCTCGACTGGATG 1669676 33 100.0 34 ................................. ATCTGGAAGTAGATGATGACGATCAGGAGCCCGA 1669609 33 100.0 35 ................................. TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC 1669541 33 100.0 34 ................................. ATGGGCGGGCTCGCGGCCGATGCGAGGAACGGGC 1669474 33 100.0 34 ................................. GCATCCTCGAACAGCGCCGCCGCATCACCAACCT 1669407 33 100.0 34 ................................. TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA 1669340 33 100.0 35 ................................. CTCATGCGTGGCCTTGTTGTTGAACCACGCCACAA 1669272 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1669204 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1669135 33 100.0 34 ................................. GCGAAAACCCGGACTTTGGGAGAGCGGACGGCGA 1669068 33 100.0 33 ................................. TGCATCATAATTGCGGCAACCTGACCGGCAGGG 1669002 33 100.0 33 ................................. TAACCGTGGTGACCTCCGTGATCACGGCGATCA 1668936 33 100.0 36 ................................. CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG 1668867 33 100.0 36 ................................. AGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTC 1668798 33 100.0 36 ................................. ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC 1668729 33 100.0 35 ................................. GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG 1668661 33 100.0 35 ................................. CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG 1668593 33 100.0 35 ................................. CTTGTACACGGCGCACATCGCCGCGCAGTCGAACG 1668525 33 100.0 35 ................................. CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA 1668457 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1668391 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1668325 33 100.0 34 ................................. ACGTCCGTGACCGTCACGTTCGCGGCGTCACCAT 1668258 33 100.0 35 ................................. TGGAAGTGGAGTTCCGGCCTTTCCAGGAACGCTGA 1668190 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1668121 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 47 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAACCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTATAGCGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCCTGGGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCCCGTCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCACTGTGGATGATCGGCTTCTCTCCGTCCTTGAGCGTGGAGCAGGCGTCGGTGAGCATGCCGTTGGCCAGCTCGGCGTTCGGGCTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //