Array 1 203135-205802 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUYV01000011.1 Moraxella porci DSM 25326 strain CCUG 54912 54912T_ctg_0000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 203135 28 100.0 32 ............................ GCCCCAAGCACCGCTTGATCGAGTGCGATTTT 203195 28 100.0 32 ............................ CCCACCAAGTACCCAACTACCACCAAGCACCA 203255 28 100.0 32 ............................ GCTGGAATTAGCCGAGCAAGACTTTGCCGATG 203315 28 100.0 32 ............................ AAGCCCGTGTTTGCAGCACGGGCTTTGTTGTT 203375 28 100.0 32 ............................ ATGCCGAGCGCGGGTTGCAAGAACTGCCAAGC 203435 28 100.0 32 ............................ GTCTAAAAAATCTTGTTCGGCAAGCTCGAGCG 203495 28 100.0 32 ............................ TGAGATTATTACGGCGATTCGTTGGTGGTAAT 203555 28 100.0 32 ............................ ACAGGTGACACCGCCAAAGTTAATAGCGATAA 203615 28 100.0 32 ............................ TGATCAAAGCGGCACAAACCGACACCACACCA 203675 28 100.0 32 ............................ AGCCATTCGGCGATGTCGTCGATATTGACATA 203735 28 100.0 32 ............................ TCACGGTAATATTTGCCGTCATACTCAATGTA 203795 28 100.0 32 ............................ TGCCATGCACGCCCAGCAGGTCAAGCATTTTA 203855 28 100.0 32 ............................ GCCACCGATGACAGCTAAACCAAGCGCCATGC 203915 28 100.0 32 ............................ TAGAAAAATCAGCATCAAAACGCTCTCGATTG 203975 28 100.0 32 ............................ GTGCGCCCTGTCTTTCGCGATATGTGCTTTGT 204035 28 100.0 32 ............................ ATGACAACCACGCACCCCCGCCACAACTCATT 204095 28 100.0 32 ............................ CTGCCTTGGCTAGATGCTCATTTGCAAAGTCC 204155 28 100.0 32 ............................ TATAGGGGTGACCAAATAAGCCATAATCAGAT 204215 28 100.0 32 ............................ CAGCTCTTCTTTGAGCCGCATCTCGTATTCAA 204275 28 100.0 32 ............................ ACCTGCTGCAATGATTTTGGCAGCGATGTCGG 204335 28 100.0 32 ............................ AGCTACACCAAGACTTGACAGCACCGATTAAT 204395 28 100.0 32 ............................ CTCTTGAGCGCTGCACGGCTTTCACAGAACAA 204455 28 100.0 32 ............................ TGTTAATAGCTCAAGTACTTTGCCTGCTTGTG 204515 28 100.0 32 ............................ TGTCTTCTTTAGATATTTCAACCAGTCATTAC 204575 28 100.0 32 ............................ GCGTGGTACGATTCATGCGCGCGGAATGTTGT 204635 28 100.0 32 ............................ ATCGCCAAGCGTCAAGCTGCCACACTTACCCG 204695 28 100.0 32 ............................ ACCCACGATATTTGCAGGGCTAAAAGTGTAAA 204755 28 100.0 32 ............................ TGTGATGGTTGTCCATGCGCCGCCCCAGCGCA 204815 28 100.0 32 ............................ GCTAAAGCCGTTTCTCGTTCGACCGCCAGCCC 204875 28 100.0 32 ............................ GCATCAACACGGAATTAACCAAGTGGCATACC 204935 28 100.0 32 ............................ TTTAGGTCTAAGCCGTTTTCAAGGTTTGGCAA 204995 28 100.0 32 ............................ GACATCACCAATGCCAATCGTAAACGATTGCT 205055 28 100.0 32 ............................ TTGTACTTGCGTCCAATTAATCGTCATGGTTG 205115 28 100.0 32 ............................ ACTTGTCCATGCCGTCCAGTCAGACACATTGC 205175 28 100.0 32 ............................ TTGCCCGTATGTTATGCGAGATATTAATAATT 205235 28 100.0 32 ............................ GCCGTCAAAAATCGCATCAGCGAAATCAAAAC 205295 28 100.0 32 ............................ GTCCGCCCACCGCGTTTAACAGCCGTTAATAG 205355 28 100.0 32 ............................ AAGTCTGCTTTGCCCCCACATTTATCATCCAG 205415 28 96.4 32 .............C.............. TTAAAAACTAACTGCTGTAATAAATAACACGG 205475 28 96.4 32 .............C.............. ATAAGTCTTATCAATCAGTTCGAACAATGATG 205535 28 96.4 32 .............C.............. ATTTGATTTGTCGCAGATTACAAGACTTGATT 205595 28 96.4 32 .............C.............. TATTGGGATTTGGGCGTATCTGACAGTACGAC 205655 28 96.4 32 .............C.............. AAAACAGGCGATTATCAGACGGTGATTAAGCC 205715 28 96.4 32 .............C.............. TTTTTCTCAGATTTTGGCTTCGGGGTGAATGC 205775 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================ ================== 45 28 99.4 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : CGCATGGCGGCTTGGGTGATGGATGTTCCTGTGCCAAGCAAAATACAGGTGGTGTTGGCGATGGGGATATTATAATAATGATTTTCGTATTTGGTTTCGGTCAGATACAGCACACGACCGTCTTTTTGCATCACACGGCAATGCTCAAGATAAAAGATATTGGCGCGTTTTGAGTGCAAAATCGCTTTGAGATCCGTGGGTTTGAGCGTATCCATGGCGTCAATTTCCTTGATGATGAATTTAATTTAATCACACTCATTATAGCCTGTCAAGCGATGATGTGATCAAATGATAAGCTTATATTTTTCACCTACCACATCACTTATGCTATACTAAATTTGCCGTCAAATGATGATGGATGTAAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAAATTTTGATTGGGTAAAAAGGGTCAATCCATCATAAATGACTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : AAATAAAAAACCCTGCATCTGCAGGCCGGTTGGTTATTGTCTTTTTAATTCATTGATATCGAAAGTTTCGCTGGGTTCAAATGTATAATACAAATGACCCATGCTGTTTTTGATGCGCATTTTAATGATCGTGCCGCGCCCAAGCTCGGTGAGCATCAGCTTGGGCTTGGTTATCTCCATGCTTGTGCTGTCCACCATGGCCATTGGGATATTTGGCAGTTTTTTGCCATCAATATTCAGATCCAGACTTGGGCAGCTTGGCAAGCAAGAAAATTGATGCCATGATCCCTGATCATAGTCTCCAGACAGCATCAGTACGGCCATTGGTTTTTGATATCTGACATCTGCGACTTCATAGCCCACAGACAAAATCGCATTGCCGTCGGTTGAGGTGATGAAAGCTGTTTTATAAACCTCATCATCAAACTCATTATCGATCCGATGGTACTGCCAATCGTGATTAAGCACTGTTGCTGGCGTCGCAAGCGTCATTGGTGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //