Array 1 116217-116508 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOK01000008.1 Clostridium botulinum strain CDC 1744 10148_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 116217 30 100.0 36 .............................. TCCTCCATATCTCACATATCCTTTCTAAAACATTTC 116283 30 100.0 34 .............................. GTTCTGATTTCAAATTTATTTACTATCCTTTCTA 116347 30 100.0 36 .............................. AAAGTAAGTTTACTCTAGGTTGTCGAACTGTTCCCA 116413 30 100.0 36 .............................. TACATTTTCATAAATCCAGTTGCCACTTTATTAACA 116479 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : GCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCTTCCTAAAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCTGTACAATATTTCTCATAGGACTATTATACGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATCTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTGAAATAAATAAAAGAAAAGAACAAAAACTTTTTCCAATCGACTTTAAGTTGAAAATTTATCGAAATCATTGATATATAAGGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATACCCTAATCAGTTGGAAATTTTTATTTATAACCTTGTAAAGTCAATGGTTCTATGATATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : TTCATATTCCCATTCATCTTTGCAATCTTTTCTCTTAGTTGAACATTAATATAGATGAAAAGCCACCCTTAATAATTAAATATATGGGTGGCATAGTTGTATTTAATTTATATACGAAACGATTGTAAATAGTTTTGTATGTCTTCTTCAGAAGTATTGAGCAAATCAGTAAGCATCCTTTGAATAGAGTGCAGGGTTTTAATTCTCTCTTCAATTTCGCAGATTTTATTCTTTACCAATCCTTTTAAATTCTCTCCATCCATTTCTTGGCTGAGCATTTTCAGTATTTCTTTGATTTCTTTTAACGAATATCCTAATGATTTAGCATCTTTGATGAATTTAATTTTCACAAGATAATCATCTGTGTAGATTCGATAACCATTGGCTATCCGCTTTGGGGCAGGCAAGATGCCACTATCTTCATAGTAGCGTATAGTTGATGTACTTATCCCAGTTTGCCTTGCTAGTTCACCGCGTGTCATTTTGTTCACTTATATTAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 119246-119800 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOK01000008.1 Clostridium botulinum strain CDC 1744 10148_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 119246 30 100.0 36 .............................. TTAAATCGATCAGTAATTAATATGTTTTTATCTCTT 119312 30 100.0 35 .............................. CGTTTTTTTGTTGCAGGTTTTATTAAAAGTAATAG 119377 30 100.0 36 .............................. AAGATAAGGCTTTCTGTACCCGTATTAAAATAAGTC 119443 30 100.0 34 .............................. GAGGGAGATAAATATGACAGGAAGGTATGAAATA 119507 30 100.0 36 .............................. ATAATAAAAAGAAATAGTTATATATATATTGGACAT 119573 30 96.7 37 ..........G................... TTGTTTTTATAATCTGGTTCCCAATATTTAAAAGAAA 119640 30 100.0 36 .............................. TTTCTAAAAGTTTTAGTATTAAACCTTTTTTCTTTT 119706 30 96.7 35 ...G.......................... TTATGATATGATTTTATTTGTTTAAGAGTATCTGC 119771 30 96.7 0 ...G.......................... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.9 36 GTTAAACATTAACATGAGATGTATTTAAAT # Left flank : GAATATTTATGGTGTCAGATATTGTGCGTCCATTATGTAGTTTTTCCAGGTAAATTAAAAAATAAAAGTAATGTAAACTCAATCATATTAGTGGTTTATATAGGATTTTTTATAGAAATTTCTATTTTATAAAATCATCTGGAAAGCTTTCTGGAAAATCTTGATATTTCAATGGGGGTGTGCTATTTTTAATTTTAAGGAATATTGATTTTACAGTGGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACTCAAATTTACAATTTGGTGTGAGTCACTTACTCCTTGGAGAATAAGAGAAGGAGTTTTATAAATTGAATCTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGTCGTTGATATATAAGGCTCAGGATAGGTTTTATTTTATATTTATTAAAAAACGTAATCACTTGGAAACCTTTCTATAAAACCTTGCAAAATCAATGGTTGTATGATATTCTTAAAAACAAGGAATGGCTATTTTACTATG # Right flank : TACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTCTTTTTGGGTTGTTGACTTGTTAGTCTAAAGCTACACCATAAGAAGGTTCATTAACACATGTGGAAGAACAGGTAATAGATACAGCGCTTGCTATTGATATGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTTCTAAGTTGTATCATAACCTAAGTAAATTATAAGAATATATGGTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGACGTCTTAGATTTTTTATTGCATGAGATTGTACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACTTACAATGATAAAGTAGGTCCTGATTTTTATTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACATTAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 133239-133017 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFOK01000008.1 Clostridium botulinum strain CDC 1744 10148_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 133238 28 100.0 36 ............................ GTTGATGAAACAAATATCGAAGATGAATATATTTAT 133174 28 100.0 36 ............................ ATAATTTTATCATAGAAAATGTAATTCTATTTGAAT 133110 28 96.4 38 ........................T... AACAATAGAGGGGCTAAGTTCCTGGTGTGAAGCAAAAT 133044 28 92.9 0 ............C......A........ | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 97.3 37 TTAAATACATCTTATGTTACTGTTCAAC # Left flank : TTATTATACCTGTAAATATAAAATTTTTCTTCTTCCTAGTTAGTTCTTTTAAGTCTTTTTTGTTCTTTAAAAAATAACCTCCCACTACAATTGCTGAAAAAATAGTTGCCCATCCCGTAAATCTAGGGAAGCTTCCCATTAACACCATATACATTACCACTAATAAGGCTACATGAGATTTTTTCATATTACGAAATTTATCCACAATACTCCCTCCATATTTTTATAATATATTTCCTACACAAATATTCTTCTACAGAATTATGGATAATCCTTCAAAAATATAAAATAATATACAATATCTACATAATTACAAAAAACTATTTTATCTATCCCCTTTAAATACTAAAAACCTGTCCTAAAAATAGACAGGTTTTTAAAATTAATCTAATAATTTACATATAAATTATCACAATGCATAGTTTAGTTTTATAAAAATCCCTATGCCATTCTCTAAGGAGTAAGCGATTCACACCAAATCGTAGACTTGGGTTCTCTGC # Right flank : CATAGTAAAATAGCCATTCCTTATTTTTAAGAATAGCATATAGCCATTGATTTTACAAGGTTCTATAGAAAGTTTTCCAAGTGATTACGTTTTTTAATAAATACATAAAACAAACCTATTCTAAGCCTTATATACCAATAGCTAGAATAGGTTTTAAAATTTGTTACGCGTGGAAAAATTCAATTTATGAAACTCTTTATCCTACTCTCCAAGGAGTAAGCGACTCACACCAAATCTAAGATTTGGGTTCCCTGCTTAAGTACTATATTATTGATATGAAATGAACCATTCCTCCAGATAATAATGCTACTATAGCGCCTATTATAGTTCCAATACCAGCCCCTTTTACATGATGCCATGGATTTCTATATTCTTTATCCATATCCTCTGTACCAGGTATTCTAGTTTTTTTACTATGACAAAAAAGACCTATATCTAGAACAATCATATCATAAATGTTTACTACAAAAAACAAAGTAAATACATAAATGTAGGCTTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAATACATCTTATGTTACTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //