Array 1 226651-226798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANCR010000001.1 Escherichia coli strain H1y1 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 226651 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 226711 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 226771 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTTGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGAATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCGGTCGGGGCTTCTCACCCCCCTGGAGTGCATTATGCGAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAATACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTAC # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 42983-43926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANCR010000011.1 Escherichia coli strain H1y1 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42983 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 43044 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 43105 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 43166 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43227 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43288 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43349 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43410 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43471 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43532 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43593 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 43654 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 43715 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 43776 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 43837 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 43898 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69626-71484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANCR010000011.1 Escherichia coli strain H1y1 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69626 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 69687 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 69748 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 69809 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 69870 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 69931 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 69992 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 70053 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 70114 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 70175 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 70236 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 70297 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 70358 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 70419 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 70480 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 70541 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 70602 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 70663 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 70724 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 70785 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 70846 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 70907 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 70968 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 71029 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 71090 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 71151 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 71212 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 71273 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 71334 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 71395 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 71456 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //