Array 1 800-168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000039.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_39_length_35410_cov_152.751649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 799 32 100.0 36 ................................ TATTTTTTCAACTTTATTATCATACGAACCATTAAC 731 32 100.0 36 ................................ TAGGAAATGATGGCATGTCTGGTAAAAAATTGTGAT 663 32 100.0 34 ................................ CGTTAGAATAGCATCCATTTTTGATGCGCGTAAA 597 32 100.0 34 ................................ CCAGTAAGGTAACTATAAGAAATTTATCTACTGG 531 32 100.0 34 ................................ GGTTTTTATATTTACAACTATTAAGACATGAGTA 465 32 100.0 34 ................................ TCTCATGCGCAGTTGTACTTGATAGTCTAATTCG 399 32 100.0 35 ................................ AATCTTTTCGCGTGGAGCTGTTTCATCGAAAACAA 332 32 100.0 35 ................................ CGTTGGCTGCTAAAGTTCTTACGAATGTTAATGAT 265 32 100.0 34 ................................ CCGGTTCTGCCTAAATTACCTAGCATAGATCGAA 199 32 96.9 0 .................C.............. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.7 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : GCCCTTTTCCTGTAAGAGCTGGTTATCATCAAGGAATCTTTGAATATACAAAACCATTTCATTAAGCGTTTCTACAAAAATAAAGACAGCATCATGATTTTTGGAAAGCGTGGTCTGTTGCTCAGTAAAAATGTCATAATCTGTTGGTTGGTTAATGATAGCCATATTTGTATATTTTTGCAGGTTTAATTTATCTATGATGGACAATTGGTTACACTCCTTTTTATACCTTGTTTCTTATAGGTGTGATTTAATAAACCACTTATTTTAACTTTATGTTATTATTTACAGAAAGACAAACCTTTATTTTTCATATTAAATTAAAACGTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTTCTTTGTATTTTTCAATAATTTGACATAAAATAGAAGTTATAATCGTATTTTTAGAATAATAAACGGAATAAGGCATATAAAAAATAGTTTTTCTGTAAATATTTAGGTGTAAATCACT # Right flank : TGATTCCTGCCTACCGGCGAGGGAGCCCCCTCAAAGTCGCACCCTGTATAGGTGCTTTTTCGCTGACATCGCACCTTATATATAAGCGCCGCAATCGAGTAGAGGGAAAAGCTAAATAACTTTTCGCCCCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7337-6970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000037.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_37_length_41240_cov_159.926220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7336 32 100.0 35 ................................ CTAAATCAGATAGGATTGTTGTTAGGTTTTTACCT 7269 32 100.0 35 ................................ TCGTACTGGTGTATGTTTAGACGACTGATATGCGC 7202 32 100.0 36 ................................ GCAAACGAAAACCTCTATGATTATTTAAAACCATTT 7134 32 100.0 35 ................................ TAGTTGTGCACGTACCATTTCGGCAATGCTTGCAT 7067 32 100.0 34 ................................ ATCTGTAAAACGGAGCTGCCTTTTGCTGCCTCTT 7001 32 90.6 0 .......................A..A....C | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 98.4 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTCCTTAATTTATCTACTTTTAACTTAATCATTTATTTTTTCGATAAATATAGCGGTATTTTGCTTAAGTTTGTCGTTTATACTGCTGGAGTAATTTAATTTTACTTTTCAATTTACAGATCACCCTGTGAATGAAATTGAAACACCAATTATGCATTTTGATACTAATTGTCGAAATAATTTAATCTACAAAGAGGAAAACATCATTTTTTGATTTTATTTGCACATATTTTAAGATTCTTCCACTTGTACGATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATTTTGTTTTTGGTAAATAATTGGGGGAAAATGAAGAGAAATGGTTCATTTTTTTACTTTTCTTCTCTAAAACAGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCA # Right flank : GCACTTATTGTTTAGCAGACCCTTGCAAATCGAGTAGAGGGAAAAGCTAGATAACTTTTCTCCCCTCTCACACCACCAGTATATACGGTTCCGTATACGGCGGTTTCATTTGGGATCAGTTTAAGCACTCTTGGGTCTTTGATCTTCTGACTCAATGTGCGCATTAATCTGTCGTGATGTACTTTATCGAAGAACTTCTCTAAATCCATATCGATAACCCAACGATAGCCATCTTTTATATAGCTTCTCGCTTTCCTGACCGCGTCATGTCCTCGTCTATTCGGGCGGAAACTATAACTGTGTTCAGAGAATGTTGGGTCATAGATGGTTGTTAGAACTTGTGCGATTGCTTGTTGGAGGAATCGGTCTAACACGGTAGGAATTCCTAGCTTCCTCATTCCGCCGTTTGGTTTCGGGATTTCGACACGACGAACGAGTTGAGGATAGTAGGTACCTCCTTCGAGTTGTCCTCGAATGGAAGCCCAGTGTTCCATGATATG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28024-27196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000037.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_37_length_41240_cov_159.926220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28023 32 100.0 33 ................................ ATGCAGAATCCTTTGAATACATGTTTAACGCCA 27958 32 100.0 36 ................................ TAACTCATTTTTAACCAATGTACGCAACCTATCCAA 27890 32 100.0 33 ................................ CTCACAATTAGTTTATTATATGTTAGCTAATAT 27825 32 100.0 35 ................................ ACTCACGATCCAACCACGTTAATTAGTAGCGTTGT 27758 32 100.0 34 ................................ ATTGTTTTGAGCGTAGCGAAAAACTAGTTCTTTC 27692 32 100.0 34 ................................ CTACTAATAATCTTTTCAATACCATCTTTACTTG 27626 32 100.0 35 ................................ TTATTTGGATCTTTTGCCGTTGTCCACAACAACCC 27559 32 100.0 34 ................................ TCGTGTTCCAATATAAAGGATTTCTGTTGTCGTC 27493 32 100.0 35 ................................ TACGGGAGTAGATGAGTTTACCTATGCCCCATTAG 27426 32 100.0 32 ................................ CGTTTGTAAAACGAGGGGAAACGGAAGGCGCT 27362 32 81.2 36 ....TCG.ACC..................... TTGTCAATTTAGGTATTGCTATGGCTCCGTTAGGGG 27294 32 100.0 35 ................................ ATTTGAGCGACATATTCTGCGTAGGCTCGTTCGTC 27227 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CGAACAAGGAAAAAACGAACCATCTATTGAAACTATCAGAACACTAGCAAAGCTGTTCGACGTCTCCACAGATTATTTACTAGGTCTGATTGATCAACCCAAACACCCCATAAATTTTACTATAAAAGATGATTTCACATTAACGGAGTCAGAATTGCAAACCGTCAAACAAATGAAAGAGCAACAACTACTAAGTGAATTAAGTGAGAATCCTGTTGAAAATGTGGAAAAACTGACGAAGCTTTGGAAATTTATTAATGAGTTGTAGGGATCGGTGCGAGGTTACAGAGTTTAAAACTAACTATTTGGTTAAAATTATTTGATTGTTTTGGTGCGAACCTGAAGTGCACATAAAAACACAGGGGGATTCGCACCATTATTTCATTGTTTTTTGTTAATATTTGGAATAAAATATATGGTATTAACATTGGTTTATAATATTTTTCTTTTTAATGGGTCATTTTTTAATGTTTTTTGTAAACTTTTAGGAAAAAATCGCT # Right flank : GCGTCAACATTAATTTCACTCATATCGTTAACAATAATGGCTATTTTTAACCCTTTCTGATTTTCAAGAAGATGATTGAGCAGAGATGTTTTACCTGCTCCCAAAAAACCACTTAAAACGGTTACTGGTATTTTTTTACTCATTGATCTTCCCTCCTCTATCATGATCCATATATGCCCGACTAGGTGTAGCGCCTTCTTGAAATAAATACTTTCCACTATACCCTTCTGTAGCTTGATCAACTTGCACTATTACCAGTTGGCAAACTCGCATACCAACCTTCAATTGAACAGGGACTCGATTTGCATTAAATAATTCCAAAGTGATCTGCCCAGAGAAGCCCGGATCGATCCATCCAGTATTTTGAATAAAGACACCAAATCTGCCGATAGAACTTCTCCCTTCAACAAAGGCTGTTAAATCGTTTGGTAAACGAATTTGCTCTAATGTTGTTCCTAACATAAACGTGTTAGGCGGAATCGTGACGACTTTCTCATCTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 275759-274932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000003.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_3_length_319355_cov_134.421693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 275758 36 100.0 30 .................................... GAGGAAAGTTCTTCTTCAAGTATTTCCTCG 275692 36 100.0 30 .................................... AAGCTGACCCTGCGCGTTAGCGCAGAAGCT 275626 36 100.0 30 .................................... TCGAAGCCTATCAACTCTAAGGCTTCGTCA 275560 36 100.0 30 .................................... CGCGGTATCGCTATTTAAATAATCATTCTG 275494 36 100.0 30 .................................... GAGATCTTAGCGAAAGTATGTCGCAAAGTA 275428 36 100.0 30 .................................... CGAAAATGCTGACAAAAAAGAGACGGACAA 275362 36 100.0 30 .................................... TTGGTCATAACATTATTATCTTTTGCTTTA 275296 36 100.0 30 .................................... TGACGCGGACATGCCCACGCTATATTTCTA 275230 36 100.0 30 .................................... TACCACTTCGCAAACAAAAAAAGACTTTTA 275164 36 100.0 30 .................................... TGGTTTAACGAATGAGGTTCCGATTGATGC 275098 36 100.0 29 .................................... TTGATCTCTAAAGCTAACTACCTTTTCAC 275033 36 100.0 30 .................................... ACTTTCGCTTCATCTCTATCGATATAGTTA 274967 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Left flank : TGAACTTACTAATTTAAATAGACATCGCTATGAGTAGATTTATGAGAATAATTGTCTTTTTTGATCTGCCGGTTGTTCTTAAAAAGGAAAGAAAAGCATATTCGCAGTTTCGAAAATTCTTATTAAATGATGGATATGTTATGTTGCAGTATTCAGTTTATTCTAGAATTTGCAATGGTGAAGATGGAGTAAGAAAGCATATGAAAAGATTGCGTGAAAATCTTCCTCCAGTAAATGGTGCGATCCGTGCTATGAAAATTACCGAGAAACAATTTGAAAATATGGAGATTTTATTAGGTACAACAGTTGTAGAAGAAGAATTAGGAGCAAAAAAAATAGATTTCTTTTAAAAAAGTGCTTGCAAATTAATTTGCAAGCACTTTTCAGCCTTTATTTCATAAAAATTTAATGAAAAAAAGATAAATATGTGAATAAATAGGATTGTTTTTAAAAATACAAAACCCTTGAAACGGGAAGCATCAAGGGTTTTAGAGCCATGT # Right flank : TGGTTTCCTTAACAATCTTTTGCTGTTTCATCATATCACATTAGAAATAAAACATCTTTAGTAAATAATAAAAGGTTGACAAAAACTAAATTGTCTGTTTGGTATATTAATGTGTATAATTTTAATAGTATTCAAGAAGTGACCTCTTTACCAGGGCAACATACATTTATGATAGAGTTCCACTTTTTTTCGCTAGGATTTTGAAGAAATATCCCCGAGAACTATTTTATACATACTAATAAAAGTTAAAAGTACTGTAATCAAATTATTAAATGGATACCAGCAATGCCAGAAAATAAACATGTTAAACAGCCAAAAAATATTGAATCTAAGTCAATCAATGAAATTTCAAAACGAACAGCTTTTAATCAAGTAACTATTAGGAGGTTTAGGATTCAAATATAATCTGAAATAGTGTTTATTATGCTATACTACTTGTAACAAAAGAGAGCTCAGCATATACATACAATAAAGGGTGTGAAGTTCATATGCGGGAACGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 131648-131287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000008.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_8_length_170306_cov_177.569051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 131647 32 100.0 34 ................................ ACTGGTATCAATACAACACGAACTATCGAGTCAG 131581 32 100.0 33 ................................ AAAAGAATACGTGGGATTGCCAAAAGGAATGTT 131516 32 100.0 35 ................................ CATGCAAGGTGAGCCTGATGCTTTTTCGGACGAGG 131449 32 100.0 33 ................................ TACGCCTGTCGTCACATGCTTCTCTTGGTTCAG 131384 32 100.0 34 ................................ CACTTAAAGCTAATGAGTGTTTTCCATCAAATTG 131318 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGCGAAAAAAATGTTAGTACTAGTTACATATGATGTCAACACATCAAGTAATGGTGGCCGAAAGCGGTTACGTAAAGTGTCGAAAGTATGTCAAAATTATGGGCAGAGAGTGCAGAATTCAGTTTTTGAATGTATTGTAGACGATGCACAGTTCGCTGCTTTAAAAATTCAGCTAACAGGATTAATAGATGAGGAAAAGGATAGCTTACGCTTTTACCGATTAGGAAATAACTACAAAACAAAAGTAGAACATATTGGTACAAAGGAAGCAATTAACTTAGAGGATCCCTTAATTTTTTAGTGCGAACCCCAAGTGCACATGAATTTCCCGGGGGATTCGCACCTTTTAAATGGAATAATATAGGTGGTTTTTTAGGAGGGCTTGCTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAGATTTCGCAAAAATCCATAAAATAGGAGTTTATGAGCAAAAATCGCA # Right flank : TTCAGATTTTGTAACCATAAATCAGGCTAGGAGAATGGTTAGCCTGATTTACATTTGATATTTTTTCTAATGCCTTTATATTTTCTGATTGGCATACTTCCAACCCCTAGGAATAAGGCCATTTTTCTTTTAGCATGTCCATAAATATTGCTACATTTTGTTTACTTTTCATAATAGGTGAGTAAACGCAGGAAAACATTCGTTTGAAATGGATGTCCTTGAGCTGTAATGTGGTGAGCTGCTCTAATTGCACATCTCGTTCTATAACACTATGAGACAATAATGACAGTCCCATTCCCTTAATCACGCTTTCTTTTACTCCCTGATTGCTACTGATCGTGAGAAATGATTTAACTTGTAATCCGTTGGAACGAATCACATGCTCTAAATATTCTCGGGTCCCAGACCCCTCCTCACGGGAAATCCATGATTGATTTTGCAAATCTGAAGTGGTTATCTCTTCTTTTTGAGATAGTTCATGGGAAACAGGTGCAACTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 245-944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000013.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_13_length_147036_cov_165.251111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 245 32 100.0 34 ................................ CATTCTTGAAGTGCGATCACCAGTTTCAAAGATC 312 32 100.0 35 ................................ TTCCTTTGCATCAGATACGTATATCTCGCATTGTT 380 32 100.0 35 ................................ ACTTAAAAAGTTTGCTATGTTCCAACTGTCATAAC 448 32 100.0 34 ................................ AAAGAAGAACAGGAAAAAGAAACAGGAAACTATA 515 32 100.0 35 ................................ GCGTAGGCTGTATGAAAATATGGTGTTCGTCCATC 583 32 100.0 35 ................................ CGCTCCTTCGATTAAGGCTTTGTCGCTTATGCGCT 650 32 100.0 33 ................................ CTGCCATTCTTTTTTTATTTTGTCTCTTGCTTC 715 32 100.0 35 ................................ ATCAAATGACTGGCACAAAAAACGTATTGCTTGGT 782 32 100.0 34 ................................ CGTGTTGGACTGTATACTTGTTGCTTGGTCAATT 848 32 96.9 33 ...................T............ CATCACATCGTTATAACCAACTTCGTAATTCCC 913 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGTTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATATTATTTTTGGCAAATATTGGAAAAACGAAGAGAAAACGTTCATTTTTTTAACTTTCCCTCTCTAAAACTGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCAG # Right flank : TGTCGCACTTATCGTTTAGTAAATCCTTGCAAATAAAATACAGCACCTCATTTTAAAAAGAGGCGCTGTTAAACTGAAACAGGTATTCAGTTAAATTTCGTAAAATCACCCGCTAGAAAATATCTGGGGAAACGTCAAAATCTAAAACACAATATAGCCTAATATATTTGTACTTATCCTTACTATTATTCACTAGCTAACTCCCCCATACTCCTTACCTGAAATCCGGTTTAAATTCTCCAGTAACTGTTTGATGCCCATTGTTGCGCTCGTACTGTTCTACCCTTTCTAGTTCAAAGCGATCCATGATAGGAATGTCATTAACTGAAAATAGGTAGGAATCCTCTGCTGGTACATGCTCATACCATGCCCAATTTGGCACAACAAAATAGTCGCCTGCTTTCCAATCGAATCGCACACCATTTATAATGGTATAACCCGATCCTTTGTAAGCATGATAAATAGTAGAATGGGTATGACGCAGTGATTTTGTATTAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 107311-108005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000013.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_13_length_147036_cov_165.251111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 107311 32 100.0 35 ................................ GCGTAATAATCGTGGATATTTCTCTGTAGGTATTT 107378 32 100.0 34 ................................ TCTTTTTTTATACGGAAATATTACCTATACAATA 107444 32 100.0 36 ................................ TTTTTGTTTACTTATTTTAACATCAGCGTGTACGTT 107512 32 100.0 34 ................................ AATATCTATGCAAGCCAAAATTAATACAATACTT 107578 32 100.0 35 ................................ TCGATCGGGAGGTCAACGTGCCATCCTCTAGCCTT 107645 32 100.0 33 ................................ TTCGAGGAGACAGTAAGCGATATGCTGAAACAA 107710 32 100.0 35 ................................ GGCAACGAGATGCTTTAATTGCCCTGTTTCTGGGT 107777 32 100.0 34 ................................ CAGACCCGCCCGTCTGGTCAAATCTAAATCTTAT 107843 32 100.0 33 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAA 107908 32 100.0 34 ................................ AGTAACGTGGACTATGGCAAAGCTGTTGTAAAAG 107974 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGAAGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCCTTTACAGTGTTTGAAGATGGGAAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTCATCTCAGAAAAGAACCATTAACTAGGTAGTGATTCTTTTGTTGATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGTCGTATAATAGAGGTGCATAATTAAAATTAGCTTATTTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAACCACTTTATGGGAATTTATGGAATTAAAATAACGATTATTTAAGCATTATTATTGATTTTCTCTTTAAAATAAGCATTTTTATACGACTTTTGTAAATTTTTAGGAAGAAATCGCA # Right flank : TTTTAGCAGCAGAGTTTCGAAGGCTAAGTATAGGTGTGTGATTGGAAGAAAAAGAATCAACTGCTTTATCAAATAGTGGTAACACGGAAATAATCTAACCATGCCAATAAAGTGAATCTTCAATCAGTGGAGGTTTACATTCGTTCCCCCACTGATTGTTAGTATGGTATGACCTAAAGGCCTCTGCACAAATCGAGTATTTAGGTGCTGCTGTTATCTCCCACAGATTATCCAACTCCTGAAGTGGGAGTTAAAGCACCTTATGTACAGGATAAAAACAGAACTCTGTAAAACACTCAAAACATTAAGCGTTTAACATGTGATTCACCGAAAACTTTAATTTTTCTAACCCATCATATAATTTCTCTTTTGGACAACCTATATTCATTCTTAGAAATTTTTCAGTTTCTCCGTATACTTCACCAGACATAATACCTACCTTCCCTACATGAACCAAATAATCTTGAATCTTCTTATTACTTGCGTTTAGTTTGCTAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 113777-114008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000013.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_13_length_147036_cov_165.251111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 113777 32 100.0 34 ................................ TGCTAATTGCCTTTGATTGGCTGTACTTGCAAGA 113843 32 100.0 35 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAAAA 113910 32 100.0 35 ................................ GTCTGGTGCGTGTATTCTTGCACCAACGTATAGTC 113977 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTATTTATGTGTAAAGGCACCTCAATCCCTCCCACTAGTCATCATTATATCTCAGTTAAAAAGGCTTAGACAGACATACTTTTTCCATTATAAAGTGGAAGAGTGTTATTGAAAGATGATGCTTAAACCGTTGTTTGCTAACTTAATTATCACGTTTTTATTTAGATTTTCTCCAATGTTTAGCGCTCATTGACAATTGAATCTAACTTCATTGCAACTAGTTTGGACAAATAATAATTTTATTCCTTTTGTTGATTTCATCATAGTTAAGTGATCTTTATTTTAAACTATCGTATAATAGAGATACAAAATTAACATGAGCTTATTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTCAACTATTTTTATGGGAATTTATGGAGTTAAAACAACGACTATTTAAGCATTATTATTGATTTTCTCTTTAAAACAACCACTTTTATACGACTTTTGTAAATTTTTAGGGAGAAATCGCT # Right flank : TTCATCAATATCGGTTGCTTGTACAGTTATCTTTTTGTTGGATAGGTTACACTTGACTAGACAAAAAAATTAAGGTGAAGTAGACTAGACGGAATATAATAATGGTTCATGATAAAAAAGGAAATTAATCATACAAAGTGTCTTTACCCGGAGAAGCAGGCATGGTACCCTGCTTCAAATACTATTTCTTCTATTTAACATCCAAACTTTTTAACTCACCACATAGTATGGACAAAAAGGATAAGGCTAGAAGCGGATATCGTCTAAAGACGGAGGAATTAGACCACTCGTTTGTAAGTTAAATCAATCAATTTTTAGTTCACATTACATCACAATCTATATCGTAATTATTATAAACATTAATTTAAAATGGTTAACAGCAAGTAAATTCTTGATCTTTTTATTAATCATAATCATGTAATATTGACCGTTAACCCCGCTTTTGCACGCTTCAATCATTTTGCTATAGTTCACGCAATATAGCCGTTTTCCATAGCAAG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 121475-121838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXV010000013.1 Virgibacillus pantothenticus strain 179-I 5A2 HS NODE_13_length_147036_cov_165.251111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 121475 32 100.0 35 ................................ TTTATACCTAGATAAAAAATCATATGATAAAATAC 121542 32 100.0 34 ................................ GCACCAAACACCGCCAAGTCAACGTCCAGATGAT 121608 32 100.0 34 ................................ AGCGTTAGATCAGTTTAATTCTGATTATGGGTCC 121674 32 100.0 34 ................................ ATAGTCGATATTTTCGAATTCCCTTGCTATGTTT 121740 32 100.0 35 ................................ CTTTTGAACATCAACAATAGGCAGGTAACCATTGC 121807 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CTGGTTCATTGCTAGTATCCTCCTATAAATATCTTCTTTTTCTAACAACTTCAGTTTACACGGTATTAATCGACAAATTAATACCGCTTTTTTCATTCCATGATGAAAATAACCGTATTAATTCACTGTTTTATTTTAGGTTATATAATGTTGCTTGGAAGAAATCATTTGCTGTAAAAGCTAAATGTTTTACCATTGAATGAAAGTTAAATCGTTTTCAAATATATCACCGAGATCTTAATAAAATTCTATTACACCTTAAATGACTAATTATGAATTATGCCTTATAATGAATACAGAATTATTAATGCCATTTCAGTTGATTTTTTTGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGGGATTCGCACCAAAATTCACTTGTTTTTGTGGTAATATATGTAATATAATTCAACACAATTAGCATTATTTACGATTTCCAAGCTAAAAATATGCTGTTTTTTGATTGTTTTTGTTATTTTTAGGAAGAAATCGCA # Right flank : TGCCGTATTTTTAAACTTTTTATAGTCCGTTTTAGTCGCACCTTATATAGATACAACAAGCTCAGAAAAAATGAAATCGCTCGCACACACCCTATTGCTACCAAATCTCTAAAAGACATGAACCAAATAACCTAACGGAGGCGCGTATGTTTATTTATATCCTTATATCTTTAAGTATCATTATCCTAACCGTCATAATTAGCGTTCTTTGGCTAATTTCATGGTCAAAAAAGCCTGATGCAGATTACGTTTTAAAATTTATAGCTAAAAATCCGCAAAGATCTTCCTTAATAATTATAAAGAACGGAAAATCGCTCGCAAACGTTAACGCGAATGAACGAAAACCATTAGCTAGCACGGTAAAAATCATGATTGCCATTGAATTTTCCCAACAAGCGGCTAATGGTAGCATAAACCCAGACGAAAAAGTTCATCTTGATGATCTCGCTCGTTTTTACGTATCTCACACTGATGGAGGCGCGCATGAAAAATGGTTAATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //