Array 1 853879-854152 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ033885.1 Bifidobacterium asteroides strain Bin7 Bin7_scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 853879 29 96.6 32 ............................T CCCGGTCGAAGGTCTCGGGGCCGTCCCAGGTA 853940 29 100.0 32 ............................. TGATAGCTCTTCTTTCGGGGCTTGGCTGGCTT 854001 29 96.6 32 ............................C TCATCGCCTGGCTCCAAAAAACCATGGTCGTG 854062 29 96.6 33 ............................C TTTCAAATATGGTAGGAATGAACTGCTGTACAA 854124 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.0 32 GTGTTCCCCGCATCCGCGGGGATGATCCG # Left flank : CTGGTGAGATGGGTGGCCATCAGATGGGAGGTTCCGGCACTGCCACGCAAATCTCACAGTGGGTGGCCAAGCACTATACCGCAACCACGGTTGACGGCGTCACTGTGTATGATCTGAGCCAGCAGCAGGCCAGCTGAGCGCAAAGAGGGCCGAACTATCCAAAAGCCACTCCCTCCGTTTGCGGTTACAGGATAAAGACGAGACGAGCTACTGACTTCTAATCTGTCGGTTGCGAGTAGTTTCCTCGTTTGCGCGTTGAAAAAGTGCAAAGCAGTTAAGAGCTAAGCAGTGAGTGGATTGGAACTATCCCAGCCCGCTCATTTCTTATTGATCAATACAGGATGGTATTTGTGTCCGATTAGAGCAAGACTAGTTATTGCAGACCAAGGCACTTCAGGTCAAACTCAATAGCGTTATTGATTTCATTACGCTGGTCTGCGTTGCATTGGTTTGCATTGCACGGTAGTAGATAATACTTACAAATGGAAGGATTTCTAAGT # Right flank : GCCTTCTGGAATGATCGTCTTCCGAAGGTGTAGTACATATCCAATATATGGACAGATATTGCCAAAGTGACAATTCTCTATCATAATTCTCTTATGCACAAATCGTGCATTTTGTTGCGACGGCAAAGGAACCGCCATGACACATATATCTTTGAAACAAAAGCTATTTTCTGACGCGAATGGCTGGGTTCGTGTTGGCGATGCAGTTGCTGGATGCCTTTTCTGATGTCCAATAAACCAATAGATATTGCTGTCAGCTTTTTCGGACTAGCGTTAGTCCTTGCCCATATTATATCGTTTGTTACTGATTCACAGTTCTGGGCTTTATGCACTTATCCAGTGGCTTGGGTGGCGATGATTATCTTTATGGCAATAGAACGCCGAGGGAAACACGATAAAGACTAGCGTCATTTGAAGATGCTGAAATATGTGAGTTGGGCGAACTGCCACATGTTTTATAGTTCGCCCTGTTCGCTTTTCCTTATGTGCTCTAATTCGTG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1600817-1595835 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ033885.1 Bifidobacterium asteroides strain Bin7 Bin7_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1600816 29 100.0 32 ............................. TCCTTATCACCGGTTTGCGGATAGAGGATGAC 1600755 29 100.0 32 ............................. AGTTCGAAATCAGGCCTGCATAGGGTGAGTGT 1600694 29 100.0 32 ............................. TGCGGTCACATCAGCATTGGACTCTACGTTTA 1600633 29 100.0 32 ............................. CCCCTTTACGCGAGTGTCCTCGGCTTGTGCAA 1600572 29 100.0 32 ............................. AGCATGGCCGTGCCGGTCATGGCCTGGATCGG 1600511 29 100.0 32 ............................. CCGATACCGCCGGTCCGACCCACTGCCGTCCC 1600450 29 96.6 32 ............................G GACAAGGCTGATGCGGCCAGGATACTGCAGGA 1600389 29 96.6 32 ............................T GCCGACTGCGCGTAAGGATCCTGCACCACATG 1600328 29 96.6 32 ............................T CCACGTCCCCATACTCCATGGCCGACGCGGTG 1600267 29 100.0 32 ............................. TGGTAGCCGGGGATGGTGCTGCCGTTTACCGG 1600206 29 100.0 32 ............................. CAGTTATCCGGTGCCTTATCATAGGGGAGCTG 1600145 29 100.0 32 ............................. TACTTCTTGCAAGACCAATTGCTCGGTTAATA 1600084 29 96.6 32 ............................T TCCGGCCCGCCGATAACGTTGCTCAGCTCCTG 1600023 29 100.0 32 ............................. GCACAGTGACCAGCCGGTCCGTGGGCATCATC 1599962 29 100.0 32 ............................. GTGGAGGAGATACCCGAGCAATCCGAGGAGGA 1599901 29 96.6 32 ............................T GATGAGCTGAACACTCGAGGCTCTGGGCTGTG 1599840 29 100.0 32 ............................. CCGGTGTAACTCAGACTGTACGTTATCTAAGG 1599779 29 100.0 32 ............................. TTGAGGACGATGAAGGCAAGGCATACGAGGAA 1599718 29 96.6 32 ............................T GGGCCTCTTCACCCCAGAAAATGTTTACATCC 1599657 29 100.0 32 ............................. GGTCTGCTTATGCACGTCATAGTAGTCGGCAA 1599596 29 100.0 32 ............................. GCTCTCCGGCATTTTGTTGCTCGCATGCCAGA 1599535 29 96.6 32 ............................G CGCAGGCACATGCCCCTTATCCAAGGGAATGT 1599474 29 96.6 33 ............................T GCCACCTTGCTCGGCCATAGTAAGTAGCTGCTG 1599412 29 96.6 32 ............................T CAGTTCGCGCTGACCCGTCAGGCCAAGGCTGG 1599351 29 96.6 32 ............................T CCTCGAGGGCGCATGGTATGACGACTGACGCA 1599290 29 100.0 32 ............................. CACCTTTGTCAAACGACAAACCCGGTAGGTAG 1599229 29 96.6 32 ............................G CCACAGGCGCCCGACGATCTGCATATCGCCAC 1599168 29 96.6 32 ............................G CCAGATAGCCAAGCTGACATGGAACCCATTCC 1599107 29 96.6 32 ............................T GGTTGCGCCAATACCCATGGTCTGGTAATTAG 1599046 29 100.0 32 ............................. CGATGGCGACGACGACACCAACGATGAGGACA 1598985 29 100.0 32 ............................. TGGTGTGTTCACTGGTAGAGGGTTGGCCGGTG 1598924 29 96.6 32 ............................T GGTTGCGCCAATACCCATGGTCTGGTAATTAG 1598863 29 96.6 32 ............................T GGCTTGCTCGAGATTCCCGGCAGTGGGATCGA 1598802 29 96.6 32 ............................T ACGGATTGAATAGACTTGATGAAGCGCTGACA 1598741 29 100.0 32 ............................. GACCGTACAGCCTTGGCGATTGTCCATGGGCG 1598680 29 100.0 32 ............................. GGCTGCCATGGGTGGCTTGCCGTCCAGTCCTC 1598619 29 100.0 32 ............................. GTCATGGGCGCCCGGGAACTCATCAATGAAGT 1598558 29 100.0 32 ............................. GGTCTCATGGCTGTTCACGCGAATTACATGGA 1598497 29 100.0 32 ............................. ATATCCGGTGTTATCACCTCGATAGGTACCGG 1598436 29 96.6 32 ............................G GGACGGTGGCAGAAGCGAAGCGCCGAGCTGTG 1598375 29 96.6 32 ............................G CGCCCAATACAACATGGCCCATGTGACGACCA 1598314 29 96.6 32 ............................T GATACAGACACTGGCAAAGACAGGCGGATAGC 1598253 29 100.0 32 ............................. GGTTGAGATCATACCATGGGTACCATTTGTGA 1598192 29 96.6 32 .........................C... GTCCCGGGAGCGTTGTCAAGCTCGCACGGGGA 1598131 29 100.0 32 ............................. GGAAAGAGCTCCCCCCTTCGAAGCAGAGTCTG 1598070 29 100.0 32 ............................. TCAGGCTTGATGCTTCTGATCCGCATTTTCCC 1598009 29 96.6 32 ............................G GACTATGAGTAAAGGACACCAAAGACCATGAG 1597948 29 96.6 32 ............................T CGGCTCTGCGCTGGGCATCGGCCTGAATTTGG 1597887 29 96.6 32 ............................T TGTATCCGGTATTCGAGATGGCTTATCTCACT 1597826 29 100.0 32 ............................. CCATCGGCATCAACCTGTGGAAGACCGGCATG 1597765 29 96.6 32 ............................T ACAGATCAAACAACCGGCCATCAGCCATCACA 1597704 29 96.6 32 ............................T TGCCAAGAGCGTCCGTAATCTCATCGCAGCCT 1597643 29 96.6 32 ............................T CTGGTTCGGTGTCAGCCCTGAACGACCTACCA 1597582 29 100.0 32 ............................. GTCCACTACACATAACCTCTTCCTTTCTATCC 1597521 29 100.0 32 ............................. AAACCCAAACCGCGAGCGCGCCAACCAGGACA 1597460 29 96.6 32 ............................G TACTGCAGGGACTGGATGGGTCTGAAAATGGT 1597399 29 96.6 32 ............................T TGGCACACAAGCCGTAGGTTGTCTATTGACCA 1597338 29 96.6 32 ............................T GAAAACGACGGGCTTATCGTCTCCATGCTGCC 1597277 29 96.6 32 ............................T TTGCTGGATATTACTTCGGATAAGATTGTTGA 1597216 29 96.6 32 ............................G GACCTTTGTGGCGGCGACGGGTCGGGTGAGAC 1597155 29 93.1 32 ........T...............G.... CGGGAGGACCTGCGCATCGGCTGGCGGTACGT 1597094 29 89.7 32 ...........G..............A.T TATGGCGGCCGGTTTCTCCTTCACTGCAGGGT 1597033 29 89.7 32 .......T...G................T TCCGCTCGTTCCGACCGTCTGGGACGGTCTTC 1596972 29 96.6 32 ............................G GTAGACACGGCTGCGTCGCTGGGCCACTCCGT 1596911 29 100.0 32 ............................. ATAGCCAACGCGCTCCCCAATGAAATAAACCC 1596850 29 96.6 32 ............................T TGTTCTACACCGGCAACGTAATTGTTCTACCC 1596789 29 93.1 32 ...........G................T GGTCGTTTTAAGACTCTTGAAGCGGCCGAAAA 1596728 29 93.1 32 .......................T....T CACGAAGAGGGGACGCGCCAATGCCTGATAAA 1596667 29 100.0 32 ............................. TGACTGGTGGCTATGGTGCCAGTGCCATTGGT 1596606 29 93.1 32 ..........................T.T GTGACCACCACCGGGGCTGATATCGTCGTCGC 1596545 29 93.1 32 .....T......................G GCGTGAAAGGCGACAAGGGCGACAAGGGCGAG 1596484 29 100.0 32 ............................. CTTCAGGCGACGGATGGAAACGATTCAGGGTC 1596423 29 89.7 32 ...........G...............GT TGTGTATAGGTCGTGAAACTGTGGACCTATAC 1596362 29 100.0 32 ............................. CTGTAGTCCCCGTCGGAGAACAGCGGGTCGCT 1596301 29 96.6 32 ............................T ACCTTGTGGCGACCACTCTATGAGCTGTACAC 1596240 29 93.1 32 .................T..........G TTGGCTGGCTGGCTTTAGCCATTGTCCCTAGT 1596179 29 93.1 32 ..............T.............G GGCATGCGGGTGAACCCGTCGCCCTCCAGGAC 1596118 29 96.6 32 ............................T GTGGCCGCCAAAAACAGTATTCGGGTGAGTGA 1596057 29 96.6 32 ..........T.................. TGGTTTTACGAGTCGCTGCCTACCTATCCCAT 1595996 29 93.1 32 .......T....................T GACTCGAAGGCTGCCAAGGCCGGAGCCGACCA 1595935 29 86.2 43 .....T..T..G......A.......... AAGCAGTGGACCATGGCTTCTTAAGAGTATACAAATACTATCG 1595863 29 79.3 0 ...T....A.....T..A..A.....T.. | ========== ====== ====== ====== ============================= =========================================== ================== 82 29 97.0 32 GTGCTCCCCGCATCCGCGGGGATGATCCC # Left flank : CGGCCACATCACCGCTAGGGTCCGGGACCGGCTTTGGGAACGCATCACAGGGCAGATCCGAACCGGAAAGGCCATCATGGTCTATTCTGCCCGCAATGAGCAGCATCTGAGTTTCAAGGTGCATCGCTCAGATTGGAACCCGGTAGACTGTGAAGGATTGACTCTTATGGAGAGGCCTACGGATGGCGGCGATGGCAGATCTGCGGGTGGTGGAAACCGATACCGCCGGACTGGTTGGAGCAATGCCAGCAAGTACAGACGAGCGGCGAGGTTCCGGCGCTCGCGATCCAGCTGAGTCCAAGCGGGGCTCACTTTTCAGATGAGTTTTGCCGATGAGTGCCAGGTACTGATTACTGGGCCAGTGCATTGATAAGGATCTCAGTGTAGATGGTCTGAATCGCAGTGGCTGAGACGGGGAATGGAAGGGGCTCGAAATGCAAACTCATTAAAAATCAGAGATCTAGTCTATTGTATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : ACAGGCTATCTGATGGATGCCCTGCAGGTTCACAAATATGAGAGGAGACGAATGACTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTACTCATGATCATATTCCTGATGACCGGATCAACAGTCACGCGTCATGCTATCCCATCACTGATGATATGGATGAGACCGAACGCCGGGTCTGGGATTCGCTGGATGATGAGGACAGGAAAATGATCCAGTCGGATCGGACATACTATGGGACGAACTATGGTGCTGGCTTCGGTGGCAATAGCAAGGTGAGTTTCTACGATGTGCTCGGCATTAGGCAGTTCGCCTGACTCATTCCGGGGCTCGTATATGTTGTTGCAATCAGTAAAGGGATCGCTATAGGAGCGTCGGGGAGAATCCATGACCGCTTCATAGTTCGAACATGAGTGTTTGATTCTCCTTCAGCCCCAGCAATCGCATTGGTGCGCCCTGATTGAAGGTTGCTTCTGCC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //