Array 1 17735-17463 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVN01000027.1 Escherichia albertii strain NIAH_Bird_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17734 29 100.0 32 ............................. TGGGGAGGGATTCTCGAGCGCATTAAGTCGAA 17673 29 100.0 32 ............................. ACGACGAAGACACCAGCCCGATCGCAAGCAAA 17612 29 100.0 32 ............................. CGAATACTGATACCGGTTTACGATCTGGATGG 17551 29 100.0 31 ............................. GACTCGCAATCGCCAGAAGACGCGATCAGTT 17491 28 89.7 0 ......C..................-..A | A [17489] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GGGTTCTCCGCGTCAGCGGGGATAAACCG # Left flank : CTGGATGAGCTATTAGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAAACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTCCTCCATTTTGCCTATCCGGGACTAATCATTGCCATTCTCTACAAATTCTGTGGCGTTAATTCTTTGTTGGAATGAAAATTATTGCGGTAGAGTTTGGTAGATTTTAGTTTGTATAGAATCACTTTAAATATTTAACTTTTCACTCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTTTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGTTTATGTTTAGA # Right flank : TTTAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGTTTTCATCATTTAGGCATTCGACCAGCTCTGGATTGAATCTGCATTCCCTAACTCACCATGCATCACTTCATACGATTTTTTCAGAATCACATCGGTGTGTTTGGTTAGGTCTTTGAAAATGCCTTTATTCATTGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGACATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCTGGATATAACCCCAGCCCTACCGCCGTATTGATCGCCGCTCCCAGGCTTGCACAGCCGTTAATGGCATTACGTCGTGCAGGAAGGTTGAATACATCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATTACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCAAGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCTCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43639-42875 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVN01000029.1 Escherichia albertii strain NIAH_Bird_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43638 29 100.0 32 ............................. CTCTGCGGCCTTACGTAGCGTAAATGTTGCGA 43577 29 100.0 32 ............................. CCGTCATTGTCACTGTAAAGTTGAGCGATAGA 43516 29 96.6 32 ............................A TTTCAGCACGACGGATCACCGGGATACGTGCT 43455 29 100.0 32 ............................. CAGGCTGGTATATCTGAACTTGTTCTTCGTGC 43394 29 100.0 32 ............................. CGATGAGGATAGAAATAATTTTGTACCAGCAG 43333 29 100.0 32 ............................. GAGTGACCACGGTGGCAAAAATATCAGGAACT 43272 29 100.0 32 ............................. CTATTCATCTCAAAAATTAGATGTTGAAGTAA 43211 29 100.0 32 ............................. TTTAATGTTCGGGATTTCGTAACCCCGGCATG 43150 29 100.0 33 ............................. TCGGCGGTGTTCCCCCCTCCCAAACCATTAAGC 43088 29 96.6 32 ............C................ GCAATACTGGCCTGACCACCGTTCACCATTGG 43027 29 93.1 32 ...........AC................ CCCGACAGGGCATAGAAGGGGCGAAAGAAAAT 42966 29 96.6 32 ............C................ GGAGAAAAATCACGGCACAGAAGAAGAGTTAC 42905 29 79.3 0 ............C..A........TCTG. | A,C [42877,42886] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCCGCGCCGGATATGTTACCCCCTGCAATTCCTGAACCTGAAACATTAGGCGATAGCGGTCACCGGGGGCGCGGTGGATGAGTATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTTCGCGCAGGTGTATATGTCGGAGATACGTCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCACTCAACTGGCTGGTTGTGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGGTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTAGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATGAGTTACCCGTTATTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CTTCTATTTTCAAACTCATCAAGACGCCTTCGCCAGTTCCTTCACCAGTGGCAGCATTATCCGCATAATGTCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCCAGCCTTACATCATGCCAGCTATTTCCCTTCGGGAACGCTGCTGTTTTTGCGCGTTGTTGATAGCCGTCTTTATTTCCAAGACTCCAGTTTGTTGCTTCAACGGAAAGTACAGCAATACCCGCTTTGTCGAAAACTTCTGCATCATTACAACATCCCGTGCCTTTCGGATAATTTTTATTCAGACCTGGATTTGTGGCGGCGGCAATTCCATGGCTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCCGGGGTGTTTACGCCGCTATTGAAATACAGCTTATCGCCTACAATCAGGTTATCGAGATTAATAACCAGTAGAGTATTTTTCTTTTCGGCTTCACTCATTCGCTTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //