Array 1 46640-47522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSN01000031.1 Phocaeicola vulgatus strain TF05-18 TF05-18.Scaf31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 46640 33 100.0 31 ................................. TGTCGCCAAGCAAACGACGGTATTTTTCCTG 46704 33 97.0 32 ................................G TAATAAAAGAACGATGCTGACAATGATCAACA 46769 33 97.0 32 ................................G CGCAACTGAATATCTCCAGCGTTGGAAAGAAG 46834 33 97.0 34 ................................C AACATAACCGAATCATACACACTAGGTTCGTAAC 46901 33 100.0 32 ................................. TATCACCAAGCAGATTACGGTATTTTTCCTGA 46966 33 100.0 32 ................................. TAGACTGATAAGCAAAAGTACCAGAAGAAGTC 47031 33 97.0 33 ................................T GAACATCAACATAATTTAAGAAGGGAATAAGGT 47097 33 97.0 32 ................................T AGTCCTGAAGAATGTTATCGACCGTTATAAAT 47162 33 100.0 32 ................................. TTGATGTGTAATATATATCAACTGTATGAGAA 47227 33 97.0 33 ................................G ATCCAATTCTTGTCATTTATCCAATTTGCATTA 47293 33 97.0 32 ................................C TTTTTGAAGATGAAGAAGTGACACCGAGCGAT 47358 33 97.0 32 ................................C TATAACGCGCGTATTGTGAAAATACTCCATGA 47423 33 100.0 34 ................................. ACCCGTTCCGCAAACTTCTCATTCAAATCTCCTT 47490 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ================================== ================== 14 33 98.1 32 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCACACCCTGCGTGGGTGTGTGGATTGAAACAACCCGTTCCGCAAACTTCTCATTCAAATCTCCTTGTCACACCCTGCGTGGGTGTGTGGATTGAAACTCGTATGGCGAGGATCTTGTCACTTATGAGATGGTCACACCCTGCGTGGGTGTGTGGATTGAAACAACCCGTTCCGCAAACTTCTCATTCAAATCTCCTTGTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 47790-48482 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSN01000031.1 Phocaeicola vulgatus strain TF05-18 TF05-18.Scaf31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 47790 33 97.0 34 ................................A ACCCGTTCCGCAAACTTCTCATTCAAATCTCCTT 47857 33 100.0 32 ................................. CGTATGGCGAGGATCTTGTCACTTATGAGATG 47922 33 97.0 34 ................................A ACCCGTTCCGCAAACTTCTCATTCAAATCTCCTT 47989 33 100.0 34 ................................. AGTATATCATCAAAATAAGGAATAGGAAGCCAAT 48056 33 100.0 33 ................................. ATTTTTATTAATTTGGTAGACGTGATGGATTGA 48122 33 100.0 32 ................................. TTGGCGGACACACTGAAGTATACTGTAACATC 48187 33 97.0 32 ................................A CTCCGTTCTGAAATGAAGGAAATGATAAATAA 48252 33 100.0 32 ................................. TATTGAATTCTGAACAGAAGATTGTTGCTGCA 48317 33 100.0 32 ................................. GGGAAGCTTGCGCCGGATACATTATGGACGTT 48382 33 97.0 33 ................................A ATGACGAGGTGAATACGTGTATAGACAACCATA 48448 33 90.9 0 ....................A.........G.A | TA [48467] ========== ====== ====== ====== ================================= ================================== ================== 11 33 98.1 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : TTAGTCACACCCTGCGTGGGTGTGTGGATTGAAACCTTTTTGAAGATGAAGAAGTGACACCGAGCGATGTCACACCCTGCGTGGGTGTGTGGATTGAAACCTATAACGCGCGTATTGTGAAAATACTCCATGAGTCACACCCTGCGTGGGTGTGTGGATTGAAACAACCCGTTCCGCAAACTTCTCATTCAAATCTCCTTGTCACACCCTGCGTGGGTGTGTGGATTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTTCTTATCTTTATAAAATATATTGAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //