Array 1 801662-802492 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483520.1 Streptococcus pyogenes strain NCTC8322 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 801662 36 100.0 30 .................................... ATAGCAAGAAGAGATAACCTTTTAACCAAT 801728 36 100.0 30 .................................... TTAATGGTCTGACTAAAGCGGATGTTGAGC 801794 36 100.0 30 .................................... CACTAGCTATGTGGCGCCTGTGGTTGTTGA 801860 36 100.0 30 .................................... TAAAAAAACTCATACTAAAAAAATAGATTA 801926 36 100.0 30 .................................... ATCGCTTCCTCTGGTAACGCTAGGTTTTTG 801992 36 100.0 30 .................................... TATGGCTAATCGGTTAAAATCCATCATCTT 802058 36 100.0 30 .................................... ATCGCTTCCTCTGGTAACGCTAGGTTTTTG 802124 36 100.0 30 .................................... TATGGCTAATCGGTTAAAATCCATCATCTT 802190 36 100.0 30 .................................... TATGGCTAATCGGTTAAAATCCATCATCTT 802256 36 100.0 30 .................................... ATCGCTTCCTCTGGTAACGCTAGGTTTTTG 802322 36 100.0 30 .................................... ATGCGACAGATATTACATTGTTGCAGTCTG 802388 36 97.2 30 ..............T..................... ACGAGTTTTGACTCGTCTAATGTTAGTGTT 802454 36 97.2 0 ................................C... | T,TT [802483,802487] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACCAAGAAAAAGTTAGTCGTCTTTGTCAATAGCGGAGCTTTTCTAACAAAAGAGGAAGTGGCTAGTTTACAAGAGTATATATCATTAACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATATTCTTAATAAATGTAGTAATACAGGGGCTTTTCGAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CATTGCCAATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAACAGTAGAGCGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGACTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAGATACTTGGCTAAGCACGACGAGGCCATTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGATAATTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGGCGGTATTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 2 1251646-1251283 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483520.1 Streptococcus pyogenes strain NCTC8322 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1251645 32 100.0 33 ................................ CTGCATGATACCCTGTTCCCACATCATGTTAGC 1251580 32 100.0 35 ................................ ATTTAATAAACTAAACGGGATGTCTGTACTATCAA 1251513 32 100.0 33 ................................ TTTAACAATATCGAACGTTGGAAACATTGATTT 1251448 32 100.0 35 ................................ AATAGAGAAAAAACTATATGAATACAAAGTCTATG 1251381 32 100.0 35 ................................ ACCTCTCATAATATCTTTAAGTTCTCTTACCTCAC 1251314 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : ATGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGTCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTTTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //