Array 1 91491-92496 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFSF01000041.1 Escherichia coli strain JML185 sequence41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 91491 29 100.0 32 ............................. GGCTGATAAAAATTTCTGTAATTGCTCGTCAG 91552 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 91613 29 100.0 32 ............................. GAGTACAACGTGTCTTTTTTCGCGACCGGAAG 91674 29 100.0 32 ............................. ACGCCGACACGCACACAACTTAATGCGTTGAC 91735 29 100.0 32 ............................. CGGATCGTGTGTGTGCCAGCGCTGCGCCCAGG 91796 29 100.0 32 ............................. GTGGTGTGGCGACGTGATAGGGGATTGTGTCA 91857 29 100.0 33 ............................. GGATTTGCGCGTGGTGAACACGGCAACACCTGC 91919 29 100.0 32 ............................. ACCATAACCTGCCCACCCGTTATTTTGTCATC 91980 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 92041 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 92102 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 92163 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 92224 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 92285 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 92346 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 92407 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 92468 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15247-18142 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFSF01000050.1 Escherichia coli strain JML185 sequence50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15247 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 15308 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 15369 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 15430 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 15491 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 15552 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 15613 29 96.6 32 ...........................A. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 15674 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 15735 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 15796 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 15857 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 15918 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 15979 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 16040 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 16101 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 16162 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 16223 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 16284 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 16345 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 16406 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 16467 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 16528 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 16589 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 16650 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 16711 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 16772 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 16833 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 16894 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 16955 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 17016 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 17077 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 17138 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 17199 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 17260 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 17321 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 17382 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 17443 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 17504 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 17565 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 17626 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 17687 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 17748 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 17809 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 17870 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 17931 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 17992 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 18053 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 18114 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //