Array 1 10215-10377 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXL01000197.1 Clostridium saccharobutylicum DSM 13864 contig_197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10215 32 100.0 35 ................................ AAACCGCCTTTTGGATACATAGGTATCTTATGGTT 10282 32 100.0 32 ................................ TGATTTGTTTTAGTCTTCTTTTTTTTATACAA 10346 32 93.8 0 ..............................AC | ========== ====== ====== ====== ================================ =================================== ================== 3 32 97.9 34 ATTTAAATACATCTCATGTTAATGTTAATCTT # Left flank : TTATTTACAATATCATCTTTTCTACCTTTAAAAATCAAATATCCATTATCATCGATATATCCAGCATCGTAAACTGTACAAGGATTAGTCATTCCTTCAACATGATATTTTGTATTTACATAAATAAAATCATTTTTTATAAACACATCCATATTAGGAAATGGTCTTCCAACACTTAATGGATTAACATACATTTCTTTATAAGTAATATATGTAATATAATTTAGTTCACTTGCACCATAATATAATATAAGCTCAGATTCAGGAAAAATTTGTTTAAGTCTATCTGCAACCGCGTAAATCAATAATTCTGAACCTGTAAAAATACTCTTAACACTATTTATCCTTTTTTTAACAAGTTTAGTTAGCATCCTTAATTTACTTGGTACTAAATAAATATTCGTAATCTTCATTTCCTCAAATGTTTTAATCCATTGTTTGCATTTAAAACTTGTTAAACTTACAATACTTCCACCTTCATATAAAGTCGACATTACTGC # Right flank : | # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTAATCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 22248-21106 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXL01000256.1 Clostridium saccharobutylicum DSM 13864 contig_256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 22247 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 22181 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 22115 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 22050 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 21985 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 21919 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 21855 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 21790 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 21724 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 21659 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 21593 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 21527 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 21462 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 21397 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 21332 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 21267 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 21201 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 21135 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : TTTATCTCATAGTTAGCTATTGTGTGAGCATGGTGAAGAAGTATCATGTAAAATAGACTATTATATTGATTTGTTATTTTTAAAAATATGACTTAAACAAGAGGTGCATAATGAGTAATTATAAGACAATGTATAAAGATAAATTAAGTAAAATGCTATTTTTAGAAATGAATTTGGATGGGTTCAAAAGGAGTGTTAATATATATAGAAATGACTTATTTACTTT # Right flank : ATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 9561-11679 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYXL01000007.1 Clostridium saccharobutylicum DSM 13864 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9561 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 9627 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 9691 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 9757 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 9823 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 9888 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 9955 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 10020 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 10084 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 10150 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 10215 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 10280 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 10346 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 10411 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 10475 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 10541 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 10607 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 10672 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 10737 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 10801 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 10867 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 10932 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 10997 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 11063 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 11128 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 11194 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 11258 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 11325 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 11390 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 11456 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 11520 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 11586 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 11650 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //