Array 1 1101990-1101757 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVY01000004.1 Enterococcus timonensis strain Marseille-P2817T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1101989 36 100.0 30 .................................... TGGTGGCACGCTTACTATTCCTGTAACGAT 1101923 36 100.0 30 .................................... ATTACATTGCACGTATGCACGATATTGACT 1101857 36 97.2 30 .........C.......................... TAGTTGAAGAACGTGAAGATGAACGGCAGA 1101791 35 77.8 0 .........C.......G......AGA..A-....T | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTTTAGAGTGATGTTGATTTGAATACTTCCAAAAC # Left flank : CACACCGATCGTGGAAAAGAATTTGACAATCAAACGATTGAAGAGATTATTGGAGCCTTTGGCATTACTCGCTCTCTGAGCAAAAAAGGTTGTCCTTATGATAATGCAGTAGCTGAATCTACATACAAGTCAGTGAAGGTAGAATTTGTTCATCAATTTCGGTTTGAGTCTTTGGAACAGTTAGAATTAGAATTATTTGACTACGTCAATTGGTGGAATCATTTACGATTGCATGGGACACTTGGTTACGAGACACCAATTGGATTTCGTTATCAGAGATTGGCGAAGCGAACCCTTGATAATGAGCGCGGATATGATACACCGAGTGAGGCGGCTTCATTCATTTGAGTGAGCTTCTGCCGTAGAGAATCATATCCGAGGAGGCTCATTGTCAAGGGCAATCGGAATAATAACACGAGACAAAAAATGACACCTTATAAATTTTGTCAAAAAAAGTGTTGCCATTTCACCAGGGTGAGGGGGAACGCTTTTCCCCCTCA # Right flank : TTATTCTGATTTGAAACACTGGTATTTAATTTAGCTTTTAATTAGACAACTGTAGAAAAATCTTCAATTGGTTAAATTGTTGAGGAATCTATTCTTGGAAATAAATCTATATTTAAAAGTATTGGACAAATTGATTTAAAGTGCTAATATTTAGATGAGATAGTCATTCAGTTCACTAATTGTTTACCATCTGCACAAAGATTAGGTTTTAGAGCTATGTTCTTTTGAAAGCTTTATCCAACGAATGGTCTAAATCCTTTCTTTTTAGATTTATTAAACCTCTAATCTTTGTGTCTACGTAATTTGGACATTCCTTTTCTATTAGCTACAGAAAAGGAATGTCCAAAACTAGTGAATAATCTGTGAGATGAATCTTTGTCTCTAAAAATTTTTGACAGATTTAGAAGGGAGAACGAAATGAAAAGAAAAGCTGTAAAATATGAAAAGCTAGTTCAAAGAATCAAGAAAAAGTTTGGGACTGTCAGTAAATTTTCTCGGAA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTGATGTTGATTTGAATACTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 1103427-1104716 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVY01000004.1 Enterococcus timonensis strain Marseille-P2817T, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1103427 36 100.0 30 .................................... ATAATCCAACTATTTCGGGGAATGCTATTA 1103493 36 100.0 30 .................................... GTAAAAATCAAAGTAATCACCAGTTTTGGA 1103559 36 100.0 30 .................................... CCATATCAGAATTTTTTTCAACAGTCTTTC 1103625 36 100.0 30 .................................... TGATTGGTGCATTAACGCCACTTGTCGGTC 1103691 36 100.0 30 .................................... TTTACATAGGGGCGTTTGGTTTCTCCGTCA 1103757 36 100.0 30 .................................... AAGATTTGGGCTTAAATCTTGTACCAGCAT 1103823 36 100.0 30 .................................... TGGCCGTGAAGAGATCACGTCACATGCTAC 1103889 36 100.0 30 .................................... TATGAAGAAGCATTGTTGTATAGCGATGAT 1103955 36 100.0 30 .................................... CATACTGGTGGTTATGGCGCAAGCAATAAT 1104021 36 100.0 30 .................................... CGATTTTCGCCAACTCTTTGATAAATATCT 1104087 36 100.0 30 .................................... AGAAATAGACTCTTCATAACCATTATCTCC 1104153 36 100.0 30 .................................... TCGTTGTAGATAGTTGCTTCCAGCACACCG 1104219 36 100.0 30 .................................... TACCGCAACGCTAGAATATAGTTCCAGCAA 1104285 36 100.0 30 .................................... CAGCATCTTGACTTGTTCCCAAAACGTATT 1104351 36 100.0 30 .................................... AACTTCACGACCTAACAGCTGGTGCTCTTT 1104417 36 100.0 30 .................................... CCTCCTTGAGATTATTCCAGTTTTGGACTG 1104483 36 100.0 30 .................................... TTACTTTAGGCACGGCTTTGCTAGGAGTTA 1104549 36 100.0 30 .................................... CCTAATAATGATTAATATCAAATACCGCTT 1104615 36 100.0 30 .................................... AAAGTAGGAGGGGCAATTTATTCAGCTCCT 1104681 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTGGAAGTATTCAAATCAACATCACTCTAAAAC # Left flank : TTTTTACGAGTTTTGGCTGGTAATAATACGTTTGACGGGAAATTCCTAAGACTTTACACATCGCTGATATCGAGTATTTGTGCTTATTGGCATCAATTACTTGTCTTTTCGTCCGAATATCAGCGCTGCTTGCTTTAAAATATCATTTTCCATTTCTAGCTGTTGGTTTCGCTTGCGCAAAGCGATCATTTCTTTTTGTTCTGGGGTCAAGTTATCTTTCTCTTTGAAAGAACCAGAGGTTTCTGCTTGTTTAATCCATTTATCAAAAGAAGAAGCGGTTAATTCATACTCACGAATAATTTCTACCCGTGATTTTCCGGCTAGATATAGATCGACTACCTGTTGTTTAAATTCTTTTGAATAAGTTCTTCGTGGACGTCTTGACATAAAAATTCCTCCAGTGTGTTTTTTTCTATTCTACACACCTTATTTTTTTTGTCTAGTCTAGTGTAGCCGATTCACTCTAAAACTACTTTAGTACGCCAATTTGACTCATTACA # Right flank : CCGACAAAGTGAAATGGCAACACTTTTTTTGACAAAATTTATAAGGTGTCATTTTTTGTCTCGTGTTATTATTCCGATTGCCCTTGACAATGAGCCTCCTCGGATATGATTCTCTACGGCAGAAGCTCACTCAAATGAATGAAGCCGCCTCACTCGGTGTATCATATCCGCGCTCATTATCAAGGGTTCGCTTCGCCAATCTCTGATAACGAAATCCAATTGGTGTCTCGTAACCAAGTGTCCCATGCAATCGTAAATGATTCCACCAATTGACGTAGTCAAATAATTCTAATTCTAACTGTTCCAAAGACTCAAACCGAAATTGATGAACAAATTCTACCTTCACTGACTTGTATGTAGATTCAGCTACTGCATTATCATAAGGACAACCTTTTTTGCTCAGAGAGCGAGTAATGCCAAAGGCTCCAATAATCTCTTCAATCGTTTGATTGTCAAATTCTTTTCCACGATCGGTGTGGAAGAGCTGCACTTCTGTCAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAAGTATTCAAATCAACATCACTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1106117-1111249 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVY01000004.1 Enterococcus timonensis strain Marseille-P2817T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1106117 36 100.0 30 .................................... ATAACGATTGGCGATTTAACCTTTAACAAG 1106183 36 100.0 30 .................................... TGCTTCATCCCAATTTTGGAACCACAATAA 1106249 36 100.0 30 .................................... TTCAAGTGCAACCTTATTCATATGTTCCAG 1106315 36 100.0 30 .................................... AATTCCATCTGTGTTAGCCACATGCCCACA 1106381 36 100.0 30 .................................... CCACGATACGATTCACGTATTATTTTATCA 1106447 36 100.0 31 .................................... GCATTGTTTCGAGATCGTTTTAAGTGACGTG 1106514 36 100.0 30 .................................... TCTGAAGATGAATGTGAGGCAATTTTATTT 1106580 36 100.0 30 .................................... TCACTTAAAAGATGCTCTTCGTAATTTCTA 1106646 36 100.0 31 .................................... ATACTTGGGTAGATTTAGCAACCCTAGCAAT 1106713 36 100.0 30 .................................... GCTGTTGATGAGGAAAATACATTTGCTGAA 1106779 36 100.0 30 .................................... TCTAAAGTGGAACAACATATCCACATTGGG 1106845 36 100.0 31 .................................... CCTTTTTTACAATAATACGCATTGAGTGCGC 1106912 36 100.0 31 .................................... CCTGTAACGCCATGAAAATGAATACAGCCAT 1106979 36 100.0 30 .................................... GACAGCAATGCCGAGTCCTATCTAACCAAT 1107045 36 100.0 30 .................................... ACTGTTTTCAGCCAATTTCCAAATTCTCCA 1107111 36 100.0 30 .................................... TAATCTAACTTTCTAACCGCAGATAAACTA 1107177 36 100.0 30 .................................... ACAGCATCGCTTGTTTTATACATCCAGCAA 1107243 36 100.0 30 .................................... ACTGTAATTGTTCTTATATTTTGATAAGTG 1107309 36 100.0 31 .................................... AAGCAAAACGAGCCAAAACAAAGTGAACCGA 1107376 36 100.0 30 .................................... CGTAAGCTCCTTCGATATAAATTTTTCCGC 1107442 36 100.0 30 .................................... ACCCAAAAGCCTGTAAATGTATTAGAGCAA 1107508 36 100.0 30 .................................... TCTGCGTCTGTTTTATTTTTCGTGACCGTT 1107574 36 100.0 30 .................................... TCCCAAAGCTATCACTCAAAGTCGCTCTAA 1107640 36 100.0 30 .................................... TCCAAGCGACGGATATTGAAAAGACAGCCG 1107706 36 100.0 30 .................................... AGGTTCCAACATTGCCATTTGATTTGACAT 1107772 36 100.0 31 .................................... AGGGGATTGGTGCTGCAGGCGTTGACTCCAA 1107839 36 100.0 30 .................................... CGTCATTTGCTTTCTCACTGATTGCTTTGT 1107905 36 100.0 30 .................................... CTAGCAGTCAAAGTTTGGCGGTTTTGAAAA 1107971 36 100.0 30 .................................... ATCACTACAATTATAAATAATATGTTTTGT 1108037 36 100.0 30 .................................... TCCACGTTATGCAAAGTTGCAAGATATTTC 1108103 36 100.0 30 .................................... CCATTATGACGCCAGTCGAAAAAATTGCCC 1108169 36 100.0 31 .................................... CATGGAGTAAATTCATAATTTCGATATGGAA 1108236 36 100.0 30 .................................... TTTATAACACTTCTGTATCTGCGGAAAAAG 1108302 36 100.0 30 .................................... TCGACACGTTAAATAAAATGGATAACCTTT 1108368 36 100.0 31 .................................... GAAAAGCGGGAGAGATTACAAAAGCTTTACA 1108435 36 100.0 30 .................................... ACTCACTTCGCGCTTGGTTCACTAACTTTT 1108501 36 100.0 30 .................................... ATGTAGCTACCACTAAAGGTTACATTGACG 1108567 36 100.0 30 .................................... TGAGTGGGCAACATCAAAAGAAAACTTATA 1108633 36 100.0 30 .................................... CTAGATTTAAGTTTAAACGATTTAGATGCT 1108699 36 100.0 31 .................................... TTAACCACATTGATTAAAGTTACCAATGTTA 1108766 36 100.0 30 .................................... TTGCACTAGCACGACTTTTCCCTACATAAA 1108832 36 100.0 30 .................................... TAAATACAGGTAGAAACTTCATAGGTTTTG 1108898 36 100.0 30 .................................... TCTCGACCATTGACACAATAGGTCACGATA 1108964 36 100.0 30 .................................... TAACTTTAGGGTCTTAGACAAAACAGGAGT 1109030 36 100.0 30 .................................... AAAGACCCATCAGCCACGTCCGATTCGATT 1109096 36 100.0 30 .................................... TTAGAGGAGGCAAGTAGATGATTGATTTTA 1109162 36 100.0 30 .................................... TTGACTGGAGGAAGAAAAAATATGGCCTTA 1109228 36 100.0 30 .................................... GGTCTATGTCGCTCAAAGAATTTCGGCAAA 1109294 36 100.0 30 .................................... ATAGTTTAATAGGAGAAAAATATCTCTTAA 1109360 36 100.0 30 .................................... CCTCTTGATAAGTAATTTTGACTGACGTTC 1109426 36 100.0 30 .................................... TCACCTTGTCTTAAATTAATTGTTTCTAAG 1109492 36 97.2 30 A................................... AGATTGCAAAACGTATCAGTAACGAAACGG 1109558 36 100.0 30 .................................... TTGCTACATGCTCTTTTCACGGCGCTAAGA 1109624 36 100.0 31 .................................... TTTGATGGTAGCTACGTTGGCAATCAGTCGA 1109691 36 100.0 30 .................................... ACTATCTGTGTCGTGGATATCCTTTACAGA 1109757 36 100.0 31 .................................... TGGTCTTGACTGCGATTGACATCGAAACATT 1109824 36 100.0 30 .................................... AACGATATTGTACTTGCTCCATAAAATTCT 1109890 36 100.0 31 .................................... CAAGGATTGGGGCGAGATACCGGAAACCTTG 1109957 36 100.0 30 .................................... ATTGATTATGGCCGTCCGTTTGAACGCATT 1110023 36 100.0 30 .................................... AAGAATTTGCCTACATCGCTGGTAAGCCAA 1110089 36 100.0 31 .................................... TTAAGACCATTAAGACATTTACGTTTGGATG 1110156 36 100.0 30 .................................... CAAGTGGAAAGCTGAACTACAAGCCATAAC 1110222 36 100.0 30 .................................... TCGGGTGGTGTGACAGTTGTCCATCCTTGT 1110288 36 100.0 31 .................................... TCAATTGCATTTCGAGGTATTTTTGTATATG 1110355 36 100.0 30 .................................... ATTACTCCATGATTTAAAAGTCCAGTACAA 1110421 36 100.0 30 .................................... TCACAATCATTGATGATATGCTGATAAGTA 1110487 36 100.0 30 .................................... TTGATTCAGTTCAAAACAAACGTATTAGGC 1110553 36 100.0 30 .................................... CGTAGATCCTTATCCATATCTACAAAAATG 1110619 36 100.0 30 .................................... CATCGCATCAACCTAGATGGTGATTTAATC 1110685 36 100.0 31 .................................... GCGAATATCGTAATTGACCAATAAAACTATG 1110752 36 100.0 30 .................................... AATAATGGTGGTTTGAAGAAAAATCCTAAT 1110818 36 100.0 30 .................................... TGTTTCTATATCCCACATTCTTTCAGTCTT 1110884 36 100.0 30 .................................... ACATTGTTCATCAGCTGTAATTTTATAAAT 1110950 36 100.0 30 .................................... AAGTAAGTGACCTTGCTGATCAGATACCAA 1111016 36 100.0 30 .................................... GGGAAATGTCAGTATCACATTTCTAACTAA 1111082 36 100.0 30 .................................... CAGTAGTTCAGATCGGCTTTTTTTAGAATT 1111148 36 100.0 30 .................................... TGAACAAACATTTAATCCATTTTGAAAATG 1111214 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 78 36 100.0 30 GTTTTGGAAGTATTCAAATCAACATCACTCTAAAAC # Left flank : CAATTCAGCTTCATTTTTTACGAGTTTTGGCTGGTAATAATACGTTTGACGGGAAATTCCTAAGACTTTACACATCGCTGATATCGAGTATTTGTGCTTATTGGCATCAATTACTTGTCTTTTCGTCCGAATATCAGCGCTGCTTGCTTTAAAATATCATTTTCCATTTCTAGCTGTTGGTTTCGCTTGCGCAAAGCGATCATTTCTTTTTGTTCTGGGGTCAAGTTATCTTTCTCTTTGAAAGAACCAGAGGTTTCTGCTTGTTTAATCCATTTATCAAAAGAAGAAGCGGTTAATTCATACTCACGAATAATTTCTACCCGTGATTTTCCGGCTAGATATAGATCGACTACCTGTTGTTTAAATTCTTTTGAATAAGTTCTTCGTGGACGTCTTGACATAAAAATTCCTCCAGTGTGTTTTTTTCTATTCTACACACCTTATTTTTTTTGTCTAGTCTAGTGTAGCCGATTCAAAGGAATTAAATCCTCAATGCCTTC # Right flank : CCTCGTAGAATTTTTTGATTTTCCACGAAATCCCGTAATCGCGCGATTTGCCCATAGCAAAGCTTCAGATTTGAATACTCCTATATTTTAAAAATAATTTTATTTTATTGTCAAAGGACAATCTTTTCTTATGATAGGATCATATCATATTTTCTTCAAGAAGAAAATAATCCTTATCCAATACTAATTGCTTTATGCCAGATACTTTCCTTGGCTCTAAAAATAGGACGTCAATCTCCTGCAAAGAAATTTGTTTTTCTAATTCTAATCGTTCCTGCTGAGTTAAAAAAGTAGAGACATTTATTAGTACCAATAATTTTTTCTTTACTAAATACTTGAAAACTTGGATAATCTCTAATACTTTTTCAAAAATTGTGTCACTACGCGTTTCAATACGAATATTGAAAACTTTAAATAGATCAAGTATTGTCAATTCACCACTTTGTAAATCAAGTTCTTGCTCAATTAACTCTTCAGCCAGCAAGTCTCCTATATTGGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAAGTATTCAAATCAACATCACTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //