Array 1 14477-13500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUI010000018.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 229 CIRM_BIA229-i1-1_scf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 14476 33 100.0 33 ................................. TTTGAAGTCAATGCACGGGTTGGAGTGATGTCC 14410 33 100.0 33 ................................. GGCGAATTGTTGCAAATTAAACTTGGTTTTCAG 14344 33 100.0 35 ................................. TCTAATAGCTCTACATCGCTCATGATGTAGTCCGT 14276 33 100.0 34 ................................. AAACAATGAGCTCTGGACAGACCTACAGGTCATC 14209 33 100.0 36 ................................. CACTTATTTGGACGACAAGCTGGGCTTTACGACCAA 14140 33 100.0 36 ................................. AGGAAGAACTCTATGAAGCTCGTAAAGCTGCAATTC 14071 33 100.0 33 ................................. ACCGTTACTGGCGTAGGCGCTACTACGGTTACC 14005 33 100.0 34 ................................. TTCCCAACCAGGATTGACAATTTTGTCAAGATCA 13938 33 100.0 33 ................................. ATCTTGCGGGCTGAAAGATAGACATAATGTTTT 13872 33 100.0 35 ................................. GCCTCAGAAGAGGACATGAACGAGCATGGGGCCAT 13804 33 100.0 38 ................................. TGATTGTCCCGTTTGAGAAACCAGCAAGGATATACTTC 13733 33 100.0 35 ................................. TGTAGATTGTTGCGATGAGTCAGCAAGTGAGCGCT 13665 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 13599 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 13532 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ====================================== ================== 15 33 98.6 34 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTAACTAAATGTTGCG # Right flank : ATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTTGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACATATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCGCGGCGCGTTAAAAGAAGCCGGCCTTGACGTTGAAGACCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATAGCCCGGCAAATTGCTTTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27298-25440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUI010000018.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 229 CIRM_BIA229-i1-1_scf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27297 28 100.0 33 ............................ CGGACAACGGCAAGCGGCCAAGTTGGATGCCAG 27236 28 100.0 33 ............................ TCGGTGTAGTGGCAGGGCTGGGCATGATCTACT 27175 28 100.0 33 ............................ CAACTGAAAACTTTCATTAAAGGCCTCCAAAAA 27114 28 100.0 33 ............................ TAAAGCAACGGATTCTCAAATTGTAGAATGGTA 27053 28 100.0 33 ............................ TTTCTGTTACGGTTTCCGGCTCTGTAGCGTTCA 26992 28 100.0 33 ............................ TATTTGTTGGATGGTCTAGAATAAAAAACTTAA 26931 28 100.0 33 ............................ TGAGTAAAAAAATTATTGTTTCTGTTTTGATCG 26870 28 100.0 33 ............................ CAAGATTGAGAGAGGAACGGGGCTGGTCAATCC 26809 28 100.0 33 ............................ CTAAGGTAGCATAGGAGGTTAGTTATGCAAATT 26748 28 100.0 33 ............................ CCAAATTCTTTGGGCACTGGATATCTTGAAGGT 26687 28 100.0 33 ............................ TGATTGATAGTATCGAAGCTGATAAGATTACTA 26626 28 100.0 33 ............................ TGATTGATAGTATCGAAGCTGATAAGATTACTA 26565 28 100.0 33 ............................ TTACCTTGCCCCTGCTGGATATAGAGGTCGTTA 26504 28 100.0 33 ............................ TGCAAACACCAAAGATAAGCTAACCACCGCTGA 26443 28 100.0 33 ............................ CCAGTGCCAAGACTTGGAACGGTTCGGCTTGGG 26382 28 100.0 33 ............................ GCCGTGTTAGCCGCTTTCGGCCCGGTCACCACA 26321 28 100.0 33 ............................ TATCGCTAAGCTTTTGTCCCAAACTAACAGTTG 26260 28 100.0 33 ............................ CATGGTGGTAACCGACTAAATTGGCATCGATTC 26199 28 100.0 33 ............................ TGTTCAACGCACTTAAAAAGGGCTATCGTGCCT 26138 28 100.0 33 ............................ CTCTTATAAACCATCGGCTGAAGGACACAAGAA 26077 28 100.0 33 ............................ GACCCAGTGATTGAAACGCCCTCTGTGGACTGA 26016 28 100.0 33 ............................ TCAGGCCACCAGGAGCTCATATGGGATTTGATC 25955 28 100.0 33 ............................ CGGTCGTTTCTGCCGATAGATTTGCCTATGTCG 25894 28 100.0 33 ............................ TGTACACCAAAGGGCTATCTAAGGCTAAGACTA 25833 28 100.0 33 ............................ TTGAGATCGAAAAAGTAACGGAGTTTGGGCTAG 25772 28 100.0 33 ............................ TTGTAGCACGATCACTCTTAAATGCAAGCCCCT 25711 28 100.0 33 ............................ TTGTAGCACGATCACTCTTAAATGCAAGCCCCT 25650 28 100.0 33 ............................ TTGTAGCACGATCACTCTTAAATGCAAGCCCCT 25589 28 100.0 33 ............................ TGGCGACTATCTTAGTGCCAGCGTTAACATCAC 25528 28 100.0 33 ............................ TAAGCATTCCGATTTGCCATTTCTTTAATTTCT 25467 28 92.9 0 ......................CA.... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.8 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGATTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGATGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : GTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATACGAGTACCTGAAAGGTCGCGTCAAAGGCGAAGAAAGCATGACGCAAAAGTGCGAAAGAAAAGGTATGCCGCTGACGCCAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTATACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //