Array 1 19350-24406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHP010000028.1 Clostridium perfringens strain 1805-4 NODE_28_length_40585_cov_92.1793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 19350 29 100.0 36 ............................. TAACCACTTAAAACCGCCTCGTCAGTTATAGAAACT 19415 29 100.0 37 ............................. CTTTTTGTATTGCATTTTAAGTAAATTTAAGGTAATA 19481 29 100.0 35 ............................. TTTGAGCTGCTTTAATCCTTCTTATTCCTTGCCTT 19545 29 100.0 36 ............................. ATATTATCAAATTTCTTGTTTACACCTTGTCCACTC 19610 29 100.0 36 ............................. AAACTAGATTCAGCAGAAGTCATTTCCTTTATTTTT 19675 29 100.0 37 ............................. GGATAAAACTTTAAAAATTTATTCGGAAAATTTGATT 19741 29 100.0 37 ............................. GTTCATTTTTATTAAGAGGACCAACAACTATTATTAA 19807 29 100.0 36 ............................. AAAGAAATAATAGAAAAAGAAACAAAAAAAACTAAA 19872 29 100.0 37 ............................. GTTGCAAGTGGAGTAGGTAATTTAGTATCTGGAGCTG 19938 29 100.0 37 ............................. AGTTTTTGCTTCTAAAACAGAAAACTTCGAGCCTAAT 20004 29 100.0 36 ............................. ATTCATGATAATTAAACAATTATTTAAAGTATTAAA 20069 29 100.0 36 ............................. GGGTAACTATATTACCTTTGTTGCTGCTAAGCTCCA 20134 29 100.0 37 ............................. CTTTCTAAATGTGCAGGATATGAAGGGATAGAGGATC 20200 29 100.0 36 ............................. TTGTTTCTGTTTTTGAGTTTTTTGGTTGATTTAATT 20265 29 100.0 37 ............................. ATTCTTAAATGCTCTGTATATATCGATATTTTTCCAT 20331 29 100.0 37 ............................. AGGTAAAATGCAGGCAATGAAATCAGCGATTGAGGGG 20397 29 100.0 37 ............................. TCAAAAGTATGGTCAATTACTTGCTTATCAACATTAG 20463 29 100.0 35 ............................. CTTAGAAAAATAAGTTTTGACTTGGAGGAATTTAA 20527 29 100.0 36 ............................. TACTACAGATTATTATATTGATGATGTACCTGTTAA 20592 29 100.0 37 ............................. GTTTCTACTTCTAAAGGAAATAGTAATTATTCTACTA 20658 29 100.0 36 ............................. AGTATTTATATAAAACCGTTACTAAAGAAATGGATG 20723 29 100.0 36 ............................. TAGTCTTACCAAACCCAGGCAGACCAAAAAATCCAA 20788 29 100.0 36 ............................. GATGAGGTAGTGCATCATAAGAATAAAATTAAAACA 20853 29 100.0 36 ............................. TCTAAGCATTTCTAAAACTACTTTTTCTTTAGATAT 20918 29 100.0 37 ............................. TAAGTTGCACTACCTTTAATCTTATCTTCAAATAACA 20984 29 100.0 36 ............................. TTAGCATTTGCTTTTATATCTGTAACGGCTTGTGTT 21049 29 100.0 36 ............................. TAAAGGATAATTCACTTCATTATTATAGAATTTATT 21114 29 100.0 36 ............................. ATTACTATTTTTACTGCACTTTCATTAGTTCCTTCT 21179 29 100.0 36 ............................. ATTCTTTTTATATGTGTTTCTAGCATCTTCTATAGC 21244 29 100.0 38 ............................. AACTTAAAACAATACAATTTAGTATTAAGTGGGGGAGC 21311 29 100.0 37 ............................. GACAAATATGGTTCTTTAGTTAAAAATCAAATGCTTA 21377 29 100.0 37 ............................. AGTGGACAAGTTACTTTAGAAAATATTGTTTCTGGAG 21443 29 100.0 36 ............................. ATTGATTCAACTAGGGGTATTGCTAATGGAGCTTCT 21508 29 100.0 36 ............................. TCATCAATCGGAGTCATGTCCTCACTAAAGCTATTA 21573 29 100.0 37 ............................. CATAAGAACCTTCATAAGTAACAGAACCATCTATAAT 21639 29 100.0 36 ............................. TTCAAGGGACATCAAATATTGGTTACTTTGGATTTA 21704 29 100.0 36 ............................. TGCAATTTCTCACTAACTGTAATATAATCATCAAAA 21769 29 100.0 36 ............................. GTTACTATCTTTACATCATTATCAATAAATTTATCC 21834 29 100.0 37 ............................. AAGTTTTGAGATTGTATCAAAACATCGGAAATTCTTG 21900 29 100.0 36 ............................. GCAATATTAGTTGAATGTTGCTTTATAGATTCATCA 21965 29 100.0 36 ............................. TTACTGTTGAGAAACTAACAGGAAAACCATTTGCAC 22030 29 100.0 36 ............................. ACTAAAAAACTTAAAAAAAGAAACAAAGGTTTAAAC 22095 29 100.0 36 ............................. AAGGTGTAATATAATCATCAAAAAGGCTTTCAGAAA 22160 29 100.0 35 ............................. ACAGAATTATATTTAACTCTAGGGCAATTAAGAAA 22224 29 100.0 36 ............................. TCACTTTTAGAAGCAGGACTAACAATAAACTGTGCA 22289 29 100.0 36 ............................. CCGTCATTGCCCAAGATAGTAAAAACAAAATACTTC 22354 29 100.0 36 ............................. TATGTCATGGATATAGAGTTGATGGTATTAGACATA 22419 29 100.0 36 ............................. GGTATGGTTTGGGCTTTTCCATTCTCCTTGTATACT 22484 29 100.0 35 ............................. GAGTTAATGAAAAGTGGGAAATCTCTTGGTGATGT 22548 29 100.0 37 ............................. TCCAATTTAATTGATGTGTGAAGTAACTTCATTTCTG 22614 29 100.0 37 ............................. TCTTTTTTTTCTAAACATTTTAAGATTCTTTCATCTA 22680 29 100.0 37 ............................. AAGTGTTGAAAATTCATTTCCGCATTCACATTTGAAA 22746 29 100.0 37 ............................. TATTCTTATCAAATAAGAAAGGATGAATGTTTAGATT 22812 29 100.0 37 ............................. GAAAAGCTTCGTGGAGATGTTTGTGTAATAGATGTAG 22878 29 100.0 36 ............................. TTAAGTCTAAATGCTTTGGCCGGCGTTAACTTAACA 22943 29 100.0 36 ............................. TTGCTCTTTTGCTCTTCTAAGAACTTTATAACACCT 23008 29 100.0 37 ............................. GTTGTAAAATCAAATTCTCTTTCAAAGATATCTCCTT 23074 29 100.0 37 ............................. TCAAATAAAGTAGTACTTAATAGAGCTTTATTATTTT 23140 29 100.0 36 ............................. GCCATATGGAGATGACCAAAGAAATGGTCTAGATCA 23205 29 100.0 35 ............................. TCAACTCTATATTTAATTAAAGTAGAACAAGAACT 23269 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGGATAATTTACTTCATTA 23334 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 23399 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 23464 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 23529 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 23594 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 23660 29 100.0 36 ............................. TATGGATTTATGACTGGAATGTTTGTATGGTTTTGT 23725 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 23790 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 23855 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 23920 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 23985 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 24049 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 24114 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 24179 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 24245 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 24311 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 24377 29 86.2 0 .................GAA....C.... | C [24404] ========== ====== ====== ====== ============================= ====================================== ================== 78 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTCAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 61822-64165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHP010000004.1 Clostridium perfringens strain 1805-4 NODE_4_length_117992_cov_86.6166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61822 36 86.1 30 A...C.TA..A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [61824,61834] 61890 36 100.0 29 .................................... TAATAGATTCAGATGATAATGACTACGCT 61955 36 100.0 30 .................................... CTTCTTTTATTAGCTTATTTTTATTTAAAA 62021 36 97.2 30 ......................A............. ACAAATACTAGCCTTATGAATGGACAAATT 62087 36 100.0 30 .................................... AAGAAACATTGCATATTATTAAAAGCAATA 62153 36 100.0 30 .................................... GATATGTTAAAAGCATATGGGCCAAAAATA 62219 36 100.0 30 .................................... ATTATACCAGGGTTTGAAACTTCTGCTGCT 62285 36 100.0 30 .................................... ACTATGCTTTACAATGAATATGATTTAGCT 62351 36 100.0 30 .................................... CATAGTAGTCGTTAAAATAATAAGAGCTAT 62417 36 100.0 30 .................................... TGTATTTGTGGTTATATGCAGTGCAGAATT 62483 36 100.0 30 .................................... GGTAACATTACAAGTATCTGTATTGGTGAA 62549 36 100.0 30 .................................... TATCGTCCAGAATGTAGTACATGCACTGAT 62615 36 100.0 29 .................................... TTAAGTTTAACCTTAATGGGCAAGAAGTA 62680 36 100.0 30 .................................... ATCTATGACTATAACTGGAGTGATGTTGGA 62746 36 100.0 30 .................................... TCATTAACATTTTTCTGTATTCTATTTCTC 62812 36 100.0 30 .................................... AAATTAGAAAGTGGATTACCGAGCATTCGG 62878 36 100.0 29 .................................... TTAAATATACTTGGATTAATGCAGATGAA 62943 36 100.0 30 .................................... AAAAAGATATATGATAAATCTAAACAGTTA 63009 36 100.0 30 .................................... AAAGATCCTAATGGAAATTTAACTTGTTCT 63075 36 100.0 30 .................................... CACTTTGTACCCACATAATGTATTACTGTA 63141 36 100.0 30 .................................... CATTCAATGGAAGCTTATGTTATTCTTTCT 63207 36 100.0 30 .................................... GATATACAGTTTCGTTCAGACCTTGAAGAG 63273 36 100.0 30 .................................... TTTTTTTGTAGTGAACCGACCAAAGCTTCT 63339 36 100.0 30 .................................... AAAATAAAATAAACAAATCTTTGTAAAATA 63405 36 100.0 30 .................................... AGTCTGAACTTATAGGAAACTATAAGAGGT 63471 36 100.0 30 .................................... AATTTAAGTATTGGTGAAAGAGTGGCTAAG 63537 36 100.0 30 .................................... GACTTTATAAGTTGTATAGCATTTGGAAAG 63603 36 100.0 30 .................................... TTAAGTGAAGAGAATATAATAGACGCAGAA 63669 36 100.0 30 .................................... ACAAAATCAAATTATAATAAATAATCAAGA 63735 36 100.0 30 .................................... AAGAGGTAGCTTACCTACTAAGTAGGGTAG 63801 36 100.0 30 .................................... AGTTAATGATGAATACCATTTATCATTTTC 63867 36 100.0 30 .................................... CCAGTTGTTCATATTCCTAAAGGAAAGAGT 63933 36 100.0 29 .................................... TAAGGATGATGCTCAAGTTACGGATGTTA 63998 36 100.0 30 .................................... TACTTTGACATAAACGAGAGTGTAGAAGAG 64064 36 100.0 30 .................................... TATAAATCTAACTTAAATGATGAGGGGATA 64130 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.5 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //