Array 1 262335-263888 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLD01000002.1 Escherichia coli strain MOD1-EC6732 MOD1-EC6732_2_length_380601_cov_49.2709, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 262335 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 262396 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 262457 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 262518 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 262579 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 262640 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 262701 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 262762 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 262823 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 262884 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 262945 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 263006 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 263067 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 263128 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 263189 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 263250 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 263311 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 263372 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 263433 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 263494 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 263555 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 263616 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 263677 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 263738 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 263799 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 263860 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 279390-280029 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLD01000002.1 Escherichia coli strain MOD1-EC6732 MOD1-EC6732_2_length_380601_cov_49.2709, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 279390 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 279451 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 279512 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 279573 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 279634 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 279695 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 279756 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 279817 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 279879 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 279940 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 280001 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCTTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGAACTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //