Array 1 3431-380 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNNG01000166.1 Xanthomonas oryzae pv. oryzae strain LYG53 scaffold165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3430 31 100.0 35 ............................... AACAAAGTGCTCAGGTAGGAATGGGGATCCTTCCT 3364 31 100.0 35 ............................... CACAGGGGCTGCAACTCAGTCCTGGGGCTTGTTGA 3298 31 100.0 35 ............................... GTACTAGGTAGAGCCTATCCTTGGGCCGTGGGTGG 3232 31 100.0 34 ............................... TTAGTAGTTGTGCTACTAAAGGTCAGCTGCACCC 3167 31 100.0 36 ............................... ATACAATACTCCCGTGTGTTGGTGTGTTGGCAAATA 3100 31 100.0 35 ............................... CAGTGCAGCCAGCATCCTTGCATTGACTCTCCAAG 3034 31 100.0 35 ............................... AACCTAAGCAGATGGGAGGGCTACCTTGCAAGACG 2968 31 100.0 35 ............................... CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 2902 31 100.0 36 ............................... GTCCAATCACTTGTCGAGAGTGGCAAGCAGACTGAG 2835 31 100.0 35 ............................... GCCCTGGAGGCACAGCTGGATGGGCATACAGCCGG 2769 31 100.0 34 ............................... ACGATGGTACAACCACGAACTGGACAGACAATTA 2704 31 100.0 35 ............................... TGGTGCTACCGGCACGGCCTGCATGCGCCACGGAT 2638 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGAGGCGTTGGTG 2573 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 2508 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 2442 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 2376 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 2310 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 2244 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 2178 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 2112 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 2047 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 1982 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 1916 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 1850 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 1785 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 1720 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 1656 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 1591 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 1526 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 1462 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 1396 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 1331 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 1264 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 1199 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 1131 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 1065 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 1001 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 936 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 869 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 805 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 738 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 673 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 607 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 542 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 475 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 410 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 47 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //