Array 1 447709-448263 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQD01000001.1 Trichormus sp. NMC-1 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 447709 36 100.0 37 .................................... TCTTTAGAACTATTTCAGAAATTAAACCCAGTAAAAT 447782 36 100.0 39 .................................... CAGGCCATTGCGGGGTCTGCAAAAATCGCAGATCCAACA 447857 36 100.0 36 .................................... GATTGCCGTCAACGCCGACTTCTTTCAGCCAATATT 447929 36 100.0 43 .................................... GTCAAGCCAATAGCGTTCATTGACTTCGGGGAATGCGCGGCTG 448008 36 100.0 40 .................................... TGAGAGATGTTCCTGCAAAGAAAATACTATATTTTAGTGC 448084 36 100.0 37 .................................... ATCTATATTGCTCAAAAATACTAGATTATTTTCGAGT 448157 36 100.0 35 .................................... CGTAGGGGTTTAGCATTGCTAAACCCCTACCGATA 448228 36 72.2 0 ......C..TTC..C...T.TA.C.......A.... | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 96.5 38 CTTTCCAAACCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : GGTTATTTGCTGTATACATAGAAAATGTGTCGAGGTCATCGACACCACTCGTCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTTTGTAGTAAGGGTTTCGACTGTTGAAATAGGCAGTTTTGATGAAATGCAGAATAGTCCAGAAGTGAGATTTTATCAAAATCATCAAATTTGACTAAAAAAGCCTTTATTCTCCTGACTTGGAGTATTGTCTATAAAAGTGGCTCGTAATCTGTAAAAAACTTGACATTTATGGTTATTTGCTGTATACATAGAAAATGTGTCGAGGTCATCGACACCACTCGTCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTTTGTAGTAAGGGTTTCGACTGTTGAAATAGGCAGTTTTTTATCAATAAGCACTGCTTTTTTGTCAATAAAAAAAGTGGTGTCGATTTGGGTATCTGAAACCCTTGCTCTGTAAGGTTTCTAGAAGTTAACT # Right flank : CAGTCATTAATTTATTTTCTTCATACTCATAATTGGTTCTGGCATTGTATAATGCTATAACCTGCTATTTTTAAGTATCCATAAATATTCCTTCAAACCAAGGCTTTAAGTAATGCTTGAAGTTTAAGTTGTACTTCCGCAAATTCCTTATCAGGATCAGAACCGGCAACTATACCAGCACCGGCATAAAGTCTAGCGCGATTACCATCAATTAATGCCGAACGAATCCCCACAATAAACTCACAATTACCAGATCCATCTACCCAACCCAAAGGTGCTGCATATAAACCTCTTTCAAAACTTTCATAACGGCGAATTTCTGTACAAGCAATATCTCTAGCTGCACCTGCAACCGCTGGTGTAGGATGTAATTGTCCGACAATTTTTAAAGGGTGGACGTTAGCAGGAACTACGGCACTAATGGGTGTCCATAAATGCTGAATATTTGATAATTGTCGCAGACGTGGGGATAGAATTTGAGGAAATAAACCTAGTTGTGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAACCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4567-954 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQD01000014.1 Trichormus sp. NMC-1 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 4566 23 100.0 57 ....................... ATCACTGGATTCTAGCTGCTACACCCCTGACACACCCCCTGAGGTTTCCACATAACT 4486 23 100.0 53 ....................... CAAACCAGCATCTTGGGGAAGCTAACCTTTAAATTAAAAGTTTCCACATAACT 4410 23 100.0 49 ....................... AAGCAGTCGGGAAAGTCCCAAGAAAATAGCCGCCGGTTTCCACATAACT 4338 23 100.0 50 ....................... TCCTATAACTATATGGCGCAATTACTAATATGTAATGTTTCCACATAACT 4265 23 100.0 50 ....................... ATATCTGAAAATCAGTTGCAGAATTATCGATTAGACGTTTCCACATAACT 4192 23 100.0 53 ....................... CCCAAACTGAACCAACTGGACAAACTACACTTTTTTATGGTTTCCACATAACT 4116 23 100.0 51 ....................... TATAGTCGTCAGCTTGTCGGATGCTGGTGTAATTAATGTTTCCACATAACT 4042 23 100.0 54 ....................... ATCAAGCAACTCATTACCGACAATTCCAAAACCTATCAAAGTTTCCACATAACT 3965 23 100.0 54 ....................... TTGTAAATGTCTGGTATATCAGCATTTAATACCCTAGATGGTTTCCACATAACT 3888 23 100.0 48 ....................... ACGAGACTTTAGTTGACTTTGTTGCTAGATATCTGTTTCCACATAACT 3817 23 100.0 53 ....................... ATTCCTTGGTATTAATTAACTAACAACATCTATCAAATGGTTTCCACATAACT 3741 23 100.0 51 ....................... AACTAACTTAACTATTTGGTTCACATTGTGGTTAGTTGTTTCCACATAACT 3667 23 100.0 51 ....................... ATTGATCTTTATCCCAGCAATTAAATGTTTGAGTTGTGTTTCCACATAACT 3593 23 100.0 48 ....................... ATAACTTCTTAGTCCACATAAATGTACGAGGACTGTTTCCACATAACT 3522 23 100.0 54 ....................... ATTAATATCATTAATTACTTCTACATTAATACCAGGATTTGTTTCCACATAACT 3445 23 100.0 53 ....................... GTCGAATTATACGTACCTGCGGTAAATGCAATTGCTTGTGTTTCCACATAACT 3369 23 100.0 50 ....................... AATATCCTCGCGGTAATTTGCATCGTAAAAAGGAAAGTTTCCACATAACT 3296 23 100.0 56 ....................... CGATCATCAACGCTGAACAAAGCGTTTTCTTGACGGTTCTGTGTTTCCACATAACT 3217 23 100.0 54 ....................... GTTAATGCAGTGGTGTGTTTCAGCCACTTACTAAAATCAGGTTTCCACATAACT 3140 23 100.0 54 ....................... GCATTCTTCCATTTAGGAAGTAAAGCAAAGTCCTGTGTGGGTTTCCACATAACT 3063 23 100.0 50 ....................... GGAAAAGGTAAATGACGGAGAATTCAAGGCAACCGCGTTTCCACATAACT 2990 23 100.0 48 ....................... TTAAGTTTATAGATGGGATGGGGATGGATAACTTGTTTCCACATAACT 2919 23 100.0 50 ....................... ATAGCCATCAGACAATTGAACGTTTTCTCCAGGATGGTTTCCACATAACT 2846 23 100.0 52 ....................... TCATCTTCTAACAACCGATATTTGGCACGGACACCAACGTTTCCACATAACT 2771 23 100.0 49 ....................... ATAAATCCCAAGGTTATTAATCGTCACTATGGTTTGTTTCCACATAACT 2699 23 100.0 56 ....................... TGTAGTTGTTCCGTCAACCCGTCTTGTGATCATATTGCTCCCGTTTCCACATAACT 2620 23 100.0 48 ....................... TTCCTTGCACAGTAGATTTTTTGAGAAACTACAAGTTTCCACATAACT 2549 23 100.0 49 ....................... TTTGAGTATTTTGAATGTGAAGTTGGGCTATCTAGGTTTCCACATAACT 2477 23 100.0 58 ....................... GGTAAAGGGGATTCAAGACTGTCAACAGCGAAAGTTAATCCTGAGTTTCCACATAACT 2396 23 100.0 52 ....................... AAGATTCACTCTCGCTATCTAATGAAAGGACTCCAGGAGTTTCCACATAACT 2321 23 100.0 54 ....................... CCTTCTCGACAGAGCCTTGCGTTTGGCATTGTTCACAATAGTTTCCACATAACT 2244 23 100.0 52 ....................... GCATCCACAAGAGACTATTCTGCCTGATACCAAATAATGTTTCCACATAACT 2169 23 100.0 51 ....................... AATTACTCGAAGCGGCTAAATCTTTGTTGGGTGAAGAGTTTCCACATAACT 2095 23 100.0 49 ....................... ATTAATCGTCACTATGGTTTGGTTTTTATCGTTAGGTTTCCACATAACT 2023 23 100.0 49 ....................... CGGTAAACCGAACCGCTTTATACGGTCGGATAGTCGTTTCCACATAACT 1951 23 100.0 53 ....................... CTCTTTTGGTGTCGTAGAATATGGATTCTGATAGAGTGTGTTTCCACATAACT 1875 23 100.0 49 ....................... CAATCCTCCCACGCTGCCTTCGTCAAACATTAATGGTTTCCACATAACT 1803 23 100.0 55 ....................... AGTCCACCGATAGGTTTCCATCACCCGACTAGCTCCGGGCAGTTTCCACATAACT 1725 23 100.0 51 ....................... ATCCAGTCGGATTTCTGGACTGAAATTGTAGTTGTATGTTTCCACATAACT 1651 23 100.0 53 ....................... AATATGCCAGAATTATCGCTGATGTACAAAATGTCTCTCGTTTCCACATAACT 1575 23 100.0 53 ....................... GCATCCACAAGAGACTATTCTGCCTGACACCAAATAATCGTTTCCACATAACT 1499 23 100.0 54 ....................... TCACCAACGCTAACATCTGGACAAATTGCGATTTACAATAGTTTCCACATAACT 1422 23 100.0 51 ....................... TTAACCCCTCATCAGTGGGAGCAAAATAAAGGTCGCTGTTTCCACATAACT 1348 23 100.0 55 ....................... CCAATACTTAACATAATCTTTTACTCTTTTGATCTGTTCTAGTTTCCACATAACT 1270 23 100.0 48 ....................... TTGCACCACCCCCTGATTTGGTACTCGAACTCAAGTTTCCACATAACT 1199 23 100.0 49 ....................... TGGATGTGCTGAACAATAAGCCGTGCCTATATTTTGTTTCCACATAACT 1127 23 100.0 54 ....................... TCCTTGATGGGCATTGGTGGACGTTGCTATCGAAAATCCGGTTTCCACATAACT 1050 23 100.0 51 ....................... TCTTTCTTCTAATATCAGAAGCCTCATCAGACGATAAGTTTCCACATAACT 976 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================== ================== 49 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATCTGATTATTTACGACTTACCTGATAATAAAGCTGCAAATAAGCGGCGTACTCGCTTACATAAAATGCTTAGTGGTTATGGTAAGTGGACTCAATATAGTGTGTTTGAATGTTTCTTGAGTGCGGTACAGTTTGCTACACTACAAACAAAGATAGAAAAGCTGATTAAGCCTGATGAGGATTCTATTAGGATGTATGTACTAGATGCTGGTAGTGTGAAAAGAACTATCACCTATGGTTCGGAAATCCCTAGACAAGAACAAGCAATAATTATATGATGAATACATCAGCTTAATTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATTCGCCAAATCGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCGAAGCCTGAAATGAGGTTTTTTAAGAGGTCCGCCAAAATCGTCTCTAGATTCCGCCCCCAGACTATGTTTCAGATGGCGGGGTTTCCACATAACT # Right flank : TACTGAAACATGAATACCTGCGATCGCTACACTAGGTCAAAACAGCGCCTTATTTTTAGATAAAATACGAAAGCCACACTAAACGCCGCAGAGTTTTTCAATACAGGACTGAGTTTCCTCTAAGAAACCCCAGATGCAATATGAAATGTTGATGAAGCGGCAAAGCAGTATATTCACTGAATAATGCACCCCTATAGTTTATCTGCGTCGGAATATTAAGGAATTCAAAACCGCTACATTTGGTAGGTTTAGGGGTTTAGTGTTTACTTGACACGAAGAGACAGAATTAGACTAACTCGCCATTGTCACCGTATTTATGCTTAATTTATATAGCATTGTTTATTTATTTAGCAACGAAAATATACTGTAAAAATGATTAAAACTACGCTTAAATGCGATTATTATCAAATAGATAGGGCTTGCTACATCAGGCAATGAAGCAGATGTTAATAGAAAGACCATTGGTAGTCAAACAACTCGCTGTTGGAGGACTGATTCGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28214-32057 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQD01000014.1 Trichormus sp. NMC-1 scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================================================= ================== 28214 23 100.0 77 ....................... AAAAGCCTGTACCACGTACCATCGAATCTTCAGCTTCCGGAAGGCGAAGCCAAAGGAGTTGATGTTTCCACATAACT 28314 23 100.0 52 ....................... AAAAGCCTGTACCACGTACCATCGAATCTTCCCGCTGGGTTTCCACATAACT 28389 23 100.0 50 ....................... AGCTTCTTTAACTGCTAAAGGCATAAAATCATTATCGTTTCCACATAACT 28462 23 100.0 53 ....................... ATCCTTGTTTCTGGCAGCTTCCTCATATTGTAATCGTGAGTTTCCACATAACT 28538 23 100.0 52 ....................... TTGATTGGGTTAATGTTGATCTGAATAACAAGTCTTTGGTTTCCACATAACT 28613 23 100.0 49 ....................... AATTGTTGGCAAACCAAGCGATCGCAAGAATGGATGTTTCCACATAACT 28685 23 100.0 55 ....................... CACCTTCTCTAACGGGCAATCTGTCCCAGCGTTGGCTTTGAGTTTCCACATAACT 28763 23 100.0 54 ....................... ATTATCTATGAGCGATCGCAATTTTGACTGATACTCCTTAGTTTCCACATAACT 28840 23 100.0 51 ....................... CTACCTGTAATAGATGTTCATTTTTTCTACCTTCCTGGTTTCCACATAACT 28914 23 100.0 50 ....................... TATCTACTGGTTCCTACTGGAGAGTAATCTCCGATGGTTTCCACATAACT 28987 23 100.0 55 ....................... ATATATCCGATGAAGCTAGTGGCGTGTTCGGGACGACAAAAGTTTCCACATAACT 29065 23 100.0 50 ....................... TCCAATTTTACTCCCATCAACTCAGCAAACGTCTTTGTTTCCACATAACT 29138 23 100.0 52 ....................... CCTCTCTCATACCTTGTGTATCAAGGGAGGAAAACAAGGTTTCCACATAACT 29213 23 100.0 50 ....................... AGAAAATGGAAATCGGAATTTTTATCTCAGACTGGAGTTTCCACATAACT 29286 23 100.0 56 ....................... AGGCACTTTGATACTATATAGATTCTAGCGTGTAGCTAGGGGGTTTCCACATAACT 29365 23 100.0 48 ....................... AATACTTCTATCCGGGGAAAACTGAAAGGTCATTGTTTCCACATAACT 29436 23 100.0 52 ....................... GAAAGAAGAGGAAAGGATACAACCCAGACACAGAACGGGTTTCCACATAACT 29511 23 100.0 50 ....................... GATCCGATCTTGACAACTGGCTGATTGAGTAGCTTTGTTTCCACATAACT 29584 23 100.0 51 ....................... CACTCGATACCCGCTTTCAGGCTTACAGATTTACGGAGTTTCCACATAACT 29658 23 100.0 49 ....................... GGGTAAAATGTCGGATCATTCTACTTGCGATCGCGGTTTCCACATAACT 29730 23 100.0 49 ....................... TAGATATCAAGTCAGGGTTGAAAGCTTAGGAATAAGTTTCCACATAACT 29802 23 100.0 51 ....................... ATCATTAAAACCAAAAGCAGCCCCACTACCAATATCAGTTTCCACATAACT 29876 23 100.0 54 ....................... CAGTTTCATCCAGCAAAATAACCGCGTCTTGAATTTCCAAGTTTCCACATAACT 29953 23 100.0 57 ....................... CTAAAAATGAGTTACTTGCCTTGGATCGTTTACACTGACTTAGGTTTCCACATAACT 30033 23 100.0 50 ....................... CTCGATCCGAATCTAACGGACAAACGTATTTAGAACGTTTCCACATAACT 30106 23 100.0 52 ....................... AATCTGGAAAAGCTGCTGCAATTAGCTCTTTATTGAGTGTTTCCACATAACT 30181 23 100.0 52 ....................... AATCTGGAAAAGCTGCTGCAATTAGCTCTTTATTGAGTGTTTCCACATAACT 30256 23 100.0 51 ....................... CAAACTTACCCTCCAAGCCTCCAATAGCCGCACTTAAGTTTCCACATAACT 30330 23 100.0 52 ....................... AGGGGTTAAACGAGTTATATTCTGACTTCGTGACTAATGTTTCCACATAACT 30405 23 100.0 50 ....................... ATGATGAGGAGAAGGAATTGCCCCCCGCACTCCAACGTTTCCACATAACT 30478 23 100.0 51 ....................... CGAAACTAGCGATACCGAGCAATGCGATAAGTTGCATGTTTCCACATAACT 30552 23 100.0 54 ....................... ATAAGAATAAGCCTCACCACAAGCATAAACGCCGTTTCTGGTTTCCACATAACT 30629 23 100.0 50 ....................... ACAACCTTGGGGCAATGGTAACTCGTAGAGCCTACGGTTTCCACATAACT 30702 23 100.0 46 ....................... AATTCTGGACTCAAATTATGTCCATTAATGATGTTTCCACATAACT 30771 23 100.0 52 ....................... ATCGCTTCTTAGCAGCATCTTCCTTCCGAACCTTCATAGTTTCCACATAACT 30846 23 100.0 53 ....................... GTTAGCTATCATGTGACCAAATTCATCCCATGTGACAGTGTTTCCACATAACT 30922 23 100.0 54 ....................... CATTAACACTCAATTCACATCAACCTTGTGACGGTCTAGAGTTTCCACATAACT 30999 23 100.0 53 ....................... AAGATTTGCCTCTAATTCTGGTGAATTTTCAGAGGGCTTGTTTCCACATAACT 31075 23 100.0 55 ....................... CAGAGACGTAATCAACGTAATCACATTTTAAGGGTGCAGTAGTTTCCACATAACT 31153 23 100.0 51 ....................... AACCCATGATCGTTGTCCTATTTTTGTACGGTAAACCGTTTCCACATAACT 31227 23 100.0 50 ....................... TCAAGCATCTGTTGAGGAGTCAAAGCGATCGCAAAGGTTTCCACATAACT 31300 23 100.0 51 ....................... TTCATGCCCGCAACTTGGGCAAATAGTTAGCGACTTAGTTTCCACATAACT 31374 23 100.0 53 ....................... GAGAGTCTTGAATTATTCATTGAGAGTCGGTCTGGACTCGTTTCCACATAACT 31450 23 100.0 52 ....................... ACCCAGCTTTAGAATCTTTACCAATCTTGTCAAACTTCGTTTCCACATAACT 31525 23 100.0 52 ....................... TTTTTGCTGTCTGACTATCTGGCAAGCGTTCCTCTGGCGTTTCCACATAACT 31600 23 100.0 49 ....................... AAGCCACCATCATCAAGAGTGAAATGGTCAGTAAAGTTTCCACATAACT 31672 23 100.0 49 ....................... ATACCTGAGCAATACTGGATGCGTTACCTTGAGAAGTTTCCACATAACT 31744 23 100.0 49 ....................... ATTATGGAGTTCATTGGAAGAAGAATTACAATGGAGTTTCCACATAACT 31816 23 100.0 50 ....................... TTTGGAGCGGGTGCTACTCAAACCGCTACTTCTTGGGTTTCCACATAACT 31889 23 100.0 51 ....................... GCAGCGATAGACAGTCCCCTCACAAAACTGTCAACTAGTTTCCACATAACT 31963 23 100.0 49 ....................... TTGCTTTCGTCCAATCGCGAGTAGGTTTTTGAGTGGTTTCCACATAACT 32035 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================================================================= ================== 52 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : AATTTAGAACAAAAGGCAGAATTATTAAAAGTTTTTGCGAATCGTTCACCAAAGGATGCTTATTATAGTCTTCAATATCGACATGGAGATAATAATGTAATTATGCGTTTACGAGCATGGCGACCGAAAGTAGAAATTTTGCTACCTTATGATTTAAGGCAAAGAATAGCTGCCGATATTACCAAAGAAATAGGGCTTTATCATATATAATTAGTCAATAATGAATGCTTCACTATTTGTAAACAAATAAATCTTGACAAGTAACTTGTTAAATTTTACCCTTATATAAGGATAAATTTGGCAAACCTAGAGCGGGGTCAAAAACCCTGGAGATTCGCCAAATCCCCAGAACCTAGATAATTGAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCAAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCACTCCTGGATTCCGCCCGCAGATTATGTTTCAGATGGCGGGGTTTCCACATAACT # Right flank : CCGAGTAAAATACTGAGCATAAGATCATGTAGCATCAAAAAAAATGCCAAGAGCAGCTACATCCAACAAACGCAAAACCCCATCAAAAAACACCCCTTTGGTATGGGCTGATGATACTGAATTAGTTGGTTTAGTCTTTGACCTAGAAGTAACCAATTCCACATCGCTATACTCGCAATATACTATTGGACTTCATGCTTGGTTTCTAGACCAGGTGCGGCAAATTAACCCAGACCTTTCAGCATATCTGCATGATGGCGAATCAGAAAAACCCTTTAACATTTCTGCCCTCGAAGGTCAACTACTTCCCAGCGGAAAACAACTACAACTACAAGCAAATCACATTTACCGCTGGCAGATTAACGCCATTTCTCAACCAGTAGTTCAGTTCTTGAGTCAGTGGTTAAACCAACCTCCAACTACTTTGAAATTAAGGGATGCTTCCTTACAAGTAAAACAGATAAGTATTGTCCATCCACCAACTACTTATAAACAAATAC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 170860-167960 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQD01000003.1 Trichormus sp. NMC-1 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 170859 37 100.0 35 ..................................... CACCTTTATCTCCGGGCTTACCTGGTAGTCCTTTA 170787 37 100.0 34 ..................................... TATTTCTCCTATTCGGATTGTGATGCCCAATTTT 170716 37 100.0 38 ..................................... AAATAAATAATCGCTACTCAATTTCTACTCATTGGTTT 170641 37 100.0 36 ..................................... CCAGTAGCCATTAATTACACCAGCATCCGACAAGCT 170568 37 100.0 35 ..................................... TTCAAATTGCTGATATTCCCTTTCCTGCCCTAAAT 170496 37 100.0 40 ..................................... CCCATTTCTGAAATTCTTCATCTTCTAGTTTGAATAGGGG 170419 37 100.0 35 ..................................... ACCAAATCTCTCAATTAAAAGCTTAGGTATATATA 170347 37 100.0 40 ..................................... AAGGGAATATCTAGAAACCTTTCCCTCTGGTAATTATGGA 170270 37 100.0 37 ..................................... GATCAATTTAAAGTATTTGAATTGCGGTACATTCGTG 170196 37 100.0 40 ..................................... AAGCTTGAATACACAGGCGCAAGCCCCAAAGTATGGAGAA 170119 37 100.0 40 ..................................... AAATTTGATGAAGGTAAAACTGATTTTCAAGTAGCGCAAG 170042 37 100.0 36 ..................................... AAGTCCCTCTACATGACTGGTAAAGGCGAGTGGGAT 169969 37 100.0 39 ..................................... TTGATGAGGCGGGCATACTCCTTAATTCTAGAGATTTTA 169893 37 100.0 34 ..................................... GCCCTCAACTTTATCTTTAGGGTCAACGGTTTTA 169822 37 100.0 40 ..................................... CAAGTACGAAGACTTGATCGAAGGAATCAAGCGATCGCTG 169745 37 100.0 36 ..................................... ACTTTTACTTTACCGCCACCGCTGCGGGGGAGAAAT 169672 37 100.0 36 ..................................... ATTCGTATTACCCCGCGAGATTTCAAACCAATCTCA 169599 37 100.0 36 ..................................... AGAGATCGATGAATTCGGTGTCTTATCTAGTACTGC 169526 37 100.0 40 ..................................... CTTTTCCAATTAAACCCCTTCCCAGCATTGAATTCTTCAG 169449 37 100.0 37 ..................................... AGCACCTATACTTCCGTGCTTTAGATATGCAACCATT 169375 37 100.0 33 ..................................... CAGAGAACGGAAACATGACAATCTTCTGCCCGT 169305 37 100.0 35 ..................................... TCGATTATTTGGGGTGCAGCTTCGGCTTTAACTAT 169233 37 100.0 38 ..................................... AGAGGGGATTTCCTCGGCACTCTTAATGTACCAATGGG 169158 37 100.0 33 ..................................... TCGCCTTAGCTTGGGGGGCAAAAGTAGAATCAG 169088 37 100.0 41 ..................................... TTTGCCTCGCACTTTGGAAATAGAGCGATCGCCTAACAGAT 169010 37 100.0 35 ..................................... GTATTAGTGTAGGTGAGATATGTGGGCAAAAGTAG 168938 37 100.0 36 ..................................... GTTACCTTTTGATGATGAATTCCTAGGATTATCTGA 168865 37 100.0 39 ..................................... TTTGATCAACGCGATAAGGCGTGTTTTCATCTCCTCTAG 168789 37 100.0 38 ..................................... ACTCCTACCGTTGAGGTTCACAATCACTATCATACAAC 168714 37 100.0 36 ..................................... ATTCATCTGGCAATATTTTATTAAATTGTCAGGGTG 168641 37 100.0 35 ..................................... ATACAGCTATGAGGCGCTATTCTTTCTTGTCTAGG 168569 37 100.0 33 ..................................... GTACAATCTCTACCATGAGTAGCAGTTAGACCA 168499 37 100.0 35 ..................................... AATTTCTTTAATGTCTCGTTCCTGTTTATCTAAGT 168427 37 100.0 34 ..................................... ATATTAGCCGAGTAGGAATTGGGTGGCAACAAAA 168356 37 100.0 36 ..................................... GACTCCACTTTTTCGCCATTCTTCATAATGTGATGG 168283 37 100.0 33 ..................................... TTCCTCTCTTTCTGCAAGTTGAAACACCGGGAA 168213 37 100.0 34 ..................................... CCACCACCCAGAGGGTTTAATATGGGTTTATTTA 168142 37 100.0 34 ..................................... TTTGCTTTAAATGATGAGCTTAATCAATTCAATA 168071 37 100.0 38 ..................................... GAAACATTCTATTCTATCTGGGGAGCCGTAACTCTTAG 167996 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 40 37 100.0 36 ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Left flank : GATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGCCGTACTAAAATTCACAATATCCTCAAATCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTAACTGATACTCAGTATGCTAAACTGCGATCGCGCCTCAATAAGCTGATTAAACCTGATACTGACAGCATTCGCTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAGGTGGAACGAATTGGTGGTGAACAACCCCTTGATACGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTGAAAAATCCAGTTTCTCAAAAAATGCCTGAAATCCCTTTCATACAAGGCTTTCATTAATTTTCTGGATTCACGCACCCGCGCACCTTACACAGCAAGGGTTTCAGCTATTTTTTCTCTTGACACATTTTCTGAAATGGACTATGATAAGGTTGCTCGCGCAATCGAACCTTGAAAACTATATATGTAAAGGCTTTCAGCCTCCCGCT # Right flank : ATAAGTTGAGTAAGAGGATGTTTTAAAAGTATTTTTGGTAACATCAAAAGTCTCAGAACCTAACCCCCAACCCCTTCCCTACCAGGGAAGGGGAGTAAGAATCAAAGCCTCTCTCCCTGTGGGGGAGAGGTTTGGAGAGGGGTTTAGAGTATAATTTGCAACTTTTCAAACATCCTCTAAGCACAGAAATCACAAAAAACTAGTAAGCACGCACAAAAATAAAGCTTCAGTCCACTCAACAACCGCACCATAAGTATCTCCTGTATGTCCACCTAACTGATGATTAAACCAAGCAGCCGTTGAACTAGAAATCACAGTTCCAATCATCATTATCCCCATAGCCAAAACTAAATTCTGGGAATTCATAAACCAAACCAAACCACTCAAACCCAGCAGCAAAAACCAACACGGTAATAAATCTTTATAAGAACGAATCGCTTGTTTATGAAATGCACCCTTACCAGTAGGCTTTAAATAAGGATAAAAAGCGATCGCAACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 75974-78756 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQD01000006.1 Trichormus sp. NMC-1 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 75974 37 81.1 41 TA.TGC.A..T.......................... GCCCATCTTGCAACTGTGCAAAACGACAGATAAATCCACTG A [75988] 76052 37 97.3 40 ..........T.......................... GTGCCATTGCTGCCCATTGAACTCTTGCAACTATGTTGAC A [76066] 76129 37 97.3 34 ..........T.......................... ATAGCGAAGCCTTCCTCCCCATTCCTGACGTATT A [76143] 76200 37 97.3 35 ..........T.......................... ACAAATAATTATCGCCCCTCAAATTGTAGATTTAA A [76214] 76272 37 97.3 32 ..........T.......................... TCTAGGTAATACGAGTGTTTTGATATATCTGC A [76286] 76341 37 97.3 34 ..........T.......................... ACTTAAAACTACGTAAGTTATTGATTAACTAATC A [76355] 76412 37 97.3 41 ..........T.......................... TATTTGGTCTAGCAAATACATCACTCATAATTATTAATTCC A [76426] 76490 37 97.3 41 ..........T.......................... AATGGATCTATAAGATGTGCATTTATCTCAGATGAATTTAA A [76504] 76568 37 97.3 37 ..........T.......................... GTTAGGTTCATTACACATAATTTCTAATACAATGTCA A [76582] 76642 37 97.3 32 ..........T.......................... TAAATAGTGAAGGTGTTGTACCAGACGATCAG A [76656] 76712 37 100.0 35 ..................................... TAGAACTGAGTTATGAAGAAATGATGGAACAAATT 76784 37 100.0 39 ..................................... ATATAAACTACTAGATTCTGGATATCCGAACGTGTTAAT 76860 37 100.0 30 ..................................... ATTAAAAACTTGGCAATTTCTAGCTTGTAA 76927 37 100.0 35 ..................................... AGCGTGGGGCTGGCTAAAGTAATATTATTTCCTGA 76999 37 100.0 34 ..................................... CCGTAAGTGGATTTTTTGCCTAGAATCTCGCCAT 77070 37 100.0 40 ..................................... GGCGACATACTGCAATAAAATCTCGCCTATTTTGAGTCGG 77147 37 100.0 35 ..................................... TAGTAAAAAGATCACGATCACGCACGTATTGCAAG 77219 37 100.0 37 ..................................... TTTTCCGTGTATTCTAGATTCTTTTCTACTGGAATTT 77293 37 100.0 40 ..................................... TTACACTCAGGACATGGTTGCCAACCTTGGAACAATATAA 77370 37 100.0 40 ..................................... TTTGTATTGAGCAAATGCTGGAAGAGTAATTAATGATGAA 77447 37 100.0 37 ..................................... AATTTTTTGTTCTTGTTGTTTTAACTCATATCCCAGG 77521 37 100.0 39 ..................................... ATAACTGCATCTACATTCTGTGCCGAGCAACACCAGAGG 77597 37 100.0 39 ..................................... ATAACTGCATCTACATTCTGTGCCGAGCAACACCAGAGG 77673 37 100.0 40 ..................................... TTCAATAGTGTATTCCTATCCAAAACACCAGGACAGGGAG 77750 37 100.0 41 ..................................... CTGTTTTCAATGGTGATGGATTCAGAGTATTTGGTATTGTG 77828 37 100.0 39 ..................................... CGATAAATACAAGAAGGCTTCGATAACAAAACCCATAGG 77904 37 100.0 39 ..................................... ATGTATTTGTGAATACAGAAAGATTTTTTAACAATACGG 77980 37 100.0 35 ..................................... AGCATAGAAGTCGATAAAACGAATTGTTTTGTTTA 78052 37 100.0 36 ..................................... GATGCCGTCCAAGAGGGTGCTGGGACGATAGGTAAA 78125 37 100.0 38 ..................................... GACTGAACTTTGCTCCGTGGTTACTGGTGTGTCCTGTG 78200 37 100.0 36 ..................................... TTTTCTGTTTCTGGTTCAGGCTCAATCACTTTCTCT 78272 37 97.3 40 ..........T.......................... TAGGCTTTGGTCTTTCTGGTTTGGCTGATGGATTGCAAGG A [78286] 78349 37 97.3 39 ..........T.......................... CACTTGCAGAAATAGCACTGTGGCAAGTAAAAAATCTAG A [78363] 78425 37 97.3 36 ..........T.......................... GTCAAAAGATAATTTATTCCAGTTGCAGTCTGCAAT A [78439] 78498 37 97.3 41 ..........T.......................... TGAATTAGTCTGAGGAACTTTAGAAAGCTTTGCTAGTGAGG A [78512] 78576 37 97.3 35 ..........T.......................... GAAACCCTAATGGTTATAGACTAAAAGACTATCAA A [78590] 78648 37 97.3 34 ..........T.......................... GATTCGGTGGTGCGTGGTGCGTTTGCTGGCTCTG A [78662] 78720 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 38 37 98.4 37 ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TTACACCCCACATCCCACACCAATCCAGTATATATTGATGAGGGAGTGGTACATTATGGTGTTCCTAATATGCCAGGGGCAGTACCTTGGACAGCAACCCAAGCACTCAACAACAGTACTTTACCTTATGTTGTACAGTTGGCTAATTTGGGAATTAAGGCTTTGGATGTGAATCCTGCTTTGGCTAAGGGTTTGAATGTGCAGAATGGTCGTTTGGTACATCCGGCTGTACAAGAGGTTTTCCCTGATTTGGTAAGTTAAGAATCGGCTTTTTAGCGCGGATGGGTGGGTGTAAAATTTAGATGTTGCAAAAAAATAGCTGTATCTCTTGATGGGCTTGGCTTTGCGGCTATTAATGTTGATGAACCATCCGCGCACCATACAGTGACTGGGTTTCAGCGTTTTTTGTTCTTGACACAATTTCTGGAATGGACTATGATGATCCTATTCGCGCAATCGAACCTTGAAAACTAAATACAGCAGGGCTTTCAGCCTCCCGC # Right flank : CAATACTTCAATCAACACTTCGTAAATAGCTTGTCGTTTATTTGATTTAGTTTGTGTCCTTAGCTGAACTAGGGACTTTCTTATATTATGTCAGACACTACAGTTTTTACCCCAGATTACTACCGAGTTTTTGAGTGCCGGGAAGGAAAGTGGTATATAAAAGTTGGCAAGCTTTTCTACTCAAAACTGCCTTTTGCTGTTGACTTTAATGATTTTGAGCTTCTATATGGAATCACTAAGCAGCAAATAATTATTGAGTTGTTCCGAGCAGGTGACGGCAAATCTGGTTACTATCTTGCTAATCTGCGTGGCAAACAATTTTACTATTGCGGAATCCAACCGGAAAACGTCAAATTTCGATTACGAAAATTGGGAATTGGCAGAGATGATCCAACGGAGTAATTTTGTGCCTGAAAAATTCTTCATAACTTGTAGCTAATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAACCATAGTTTGTATCTATTACCTTTGC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : ATTGCAATTTTTCTTACTCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //