Array 1 163288-160574 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPL01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712446, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163287 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163226 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163165 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163104 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163043 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162982 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162921 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162860 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 162799 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162738 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162677 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162616 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162555 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162494 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162433 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162372 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162311 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162250 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162189 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162128 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162067 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162006 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161945 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161884 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161823 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161762 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161701 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161640 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161579 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161518 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161457 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161396 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161335 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161274 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161213 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161152 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161091 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161030 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160969 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 160908 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160847 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160786 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160725 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160664 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160603 29 93.1 0 A...........T................ | A [160576] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181899-179795 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPL01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712446, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181898 29 100.0 32 ............................. TCTCCAGCTGATAAGGGGCGATAAGGTGATGA 181837 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181776 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181715 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181654 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181593 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181532 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181471 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181410 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181349 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181288 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181227 29 96.6 32 .................A........... GCAACTGGAACAACGATAGCGGGCAACTGGTT 181166 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181105 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181044 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180983 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180922 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180861 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180800 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180739 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180678 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180617 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180555 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180494 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180433 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180372 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180311 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180249 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180188 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180127 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180066 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180005 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179944 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179883 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179822 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //