Array 1 18-345 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000185.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 ............................ ACCGGTGTTGAGTCGAACGGTAAAAAGCGCTT 78 28 100.0 32 ............................ ATTTCAAGGCTGAACATTAGTGTTTTATGCCC 138 28 100.0 32 ............................ AGTTTAAATGTGCATGATTTCTTTCTGTGAAT 198 28 100.0 32 ............................ TTTACTTATTAGTCTTGCAAGTTGGTGTTGGT 258 28 100.0 32 ............................ TTGTAACCACCAAGACTTTTCACCATCACAGT 318 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGTTCTCTTTCTTGTTCG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 960-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000126.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 959 28 100.0 32 ............................ ACCACCAGTAAAGCCAACGTTCGCGGCTTGGT 899 28 100.0 32 ............................ GCTAACACCAATGTCACAGTCTGATATTGAGA 839 28 100.0 32 ............................ TTACGGAAGAAATGAGCCTTGATGATATTAAA 779 28 100.0 32 ............................ TAGTTAAAGGCACTCAAGTAGCTGTAAGTGGC 719 28 100.0 32 ............................ TTGCTGAAACCTCAATAAAGGAAAACAGCGAC 659 28 100.0 32 ............................ GTCTGCGGCTGTCCACATTAAGCGACCGAACC 599 28 100.0 32 ............................ CAGACTTGCATTTGCAGAGCGCGTAGAGACGG 539 28 100.0 32 ............................ GCATAGGGCGCACTGAGCAGCAATTGCTTAAC 479 28 100.0 31 ............................ CTTTGCGCCTCGTTAATCCTCCCGTATCAGC 420 28 100.0 32 ............................ AAGCTCAGAAAGCAAGGTTTGCATTGGCGAGA 360 28 100.0 32 ............................ ACCACATCAAGACGATTAACAAGGCTGATAAC 300 28 100.0 32 ............................ GCAAGCGCATTGACCTATCAAAGCAATATAAA 240 28 100.0 32 ............................ AGATAGGTAGGGCGCTTACAAACTCAATCCAC 180 28 100.0 32 ............................ AGTCGTCGAAATGTGCGTAAATCGGTATTTGT 120 28 100.0 32 ............................ TCATAAGCATCGCACATCACCATTACCCCACT 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCAAATCAATAAAGCCAGTGCCAGAAAGCGTGACTTATGCAGCTTTTGTTCGGATGCAAGTAAAAGGTGAGGCGCGAATAGAAAAAGATATGCTCAATAAAGCACAGCGTTGGGCAGAAAAGTCAGGGCAACCGCTTAATGATTGCCTAGCAGAGCTTGAAAAAAGCAAACCTAAAGCTAATAACAAATTACCTTTTATTTGGCTAGAAAGCCAAGAAACGAGACGGCGAGACTTGAATGCAAGTAGGAAATTCCCATTGTTCATCAAAAAAGTAGAAGTTACGGTACAGCAAGTTGGTACATTTAATTGTTATGGTTTAAGCACAAACCATAATATGAAAGAAAAGCTGGTTAGTATTCCCCAGTTTTAACCTTTATTTTTGCTCTTTAAAAATTAGAAGCTAAAACAGTAAGTTACAACAAGCGATAAAAATAAGGTAAAAGTTCGTATTTTGCCTTAATCAATTGTTGTAACTAGTTTTTTGCGTGATATTATATT # Right flank : AACACCTAAAGAAACACAAGCTTTTTAGTTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45-193 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000270.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45 28 100.0 32 ............................ TGTTTGGGGTTAGCACGCAAACAGCCTCTACA 105 28 100.0 33 ............................ ATAGCGTACAGGGTTTTTAAATACTAGTTGCCT 166 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCAGCTTAGAAAGGTTAGCGAAACAGTACCCAGTGCAAAATATAG # Right flank : CAAAAATAAGATACCACAAGCGCAGTAAGTGGAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000264.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32 28 100.0 32 ............................ ACCTCCATTTAATAGTGCCTGTAGTGCTTCCA 92 28 100.0 32 ............................ CCAGCTTTAATTGTCGCCTTAGTTGAGTTACC 152 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGGTGAGGATTTAAATGTACGGTCAACTAG # Right flank : TCAAATAAAAGAAGCAATACAAGAGCATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000263.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2 28 100.0 32 ............................ GCCAGCGCCAAAGCTTGAACCTGATAGACTTA 62 28 100.0 32 ............................ TTCCAGTTTTTACGAGTCATTACCAAGCCTTA 122 28 100.0 32 ............................ GGCACCGTGGCATAAACAGGTAATAAAGCAGA 182 28 100.0 32 ............................ AACCACGCATTTTGATACACCACCTTCATACT 242 28 100.0 32 ............................ AGCAGCAAGTAGAGCGCGAGAAACAAATAGCA 302 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 34 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AG # Right flank : CTTTAAGGGTTCGGGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 240-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000235.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 239 28 100.0 32 ............................ TGACACGGTGAGCCACCAATCAACAAATCAAT 179 28 100.0 32 ............................ AATCCTGCATTGCCTGGGTGTTTTCATTTACT 119 28 100.0 32 ............................ TAGGGCATCTATAACAAAGCGCGGTGCGTGCC 59 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTCTTT # Right flank : AGATTGCAAAAGCTAATGATTTGCCGACTGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 168-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000262.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 167 28 100.0 32 ............................ ACGGTAGAGAATACCTATAGATATTCTTTCCT 107 28 100.0 32 ............................ ATACCACCACAACCGACTCCGCTAGGGTGTGC 47 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATCAAAGGCGTTACTGAAAATGACAGAGG # Right flank : AATATGTTCAGGATTTACTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18-705 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000232.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 33 ............................ ATTGCGAAAACACGCTGCATGCGTTTTACTGAT 79 28 100.0 32 ............................ TTCATAAAGGTTGCATCAACTATAGGCATAGC 139 28 100.0 32 ............................ AGTGTTACTAACTCGTCATCTGAGCGATAAAA 199 28 100.0 32 ............................ TCCACGCTGGTTGTGCCAATCTTTCAAATGGT 259 28 100.0 32 ............................ TCTCTATTCTAAAATTAATAATATATGTGATA 319 28 100.0 32 ............................ ACATCAAAGATAAGACAGGCCAAAAGACCTTA 379 28 100.0 32 ............................ GTGATGAAGTTTACACTCCAGAAACAGAAGAT 439 28 100.0 32 ............................ AACGGCGAAGAATGGCAAACGCTTGGCTTCGG 499 28 100.0 32 ............................ AACACAAGTGAGGCACTTAAAAAGGCGTTTAG 559 28 100.0 32 ............................ GCACCCCGATTGCTGATGTTCATTCAATTGAT 619 28 100.0 31 ............................ AAAACGCGAGAAAATCCACGTTCTAAGCAAT 678 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTTCACTAACCAAAGAG # Right flank : ATCTTCCCTAATTGATTAATTTGCTTATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 957-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000233.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 956 28 100.0 32 ............................ TTCATACGTGTGCTGTGGAACTTTGTTTTTAA 896 28 100.0 33 ............................ AATGTAACTCACGTTTGTTGGTGAGAGTGAATT 835 28 100.0 32 ............................ TGATGGGTATCATAACAGTGGGGCTGATGATG 775 28 100.0 32 ............................ GAACAACATTAATACAAACGTAGACAGTACAA 715 28 100.0 32 ............................ ATGACAACACGATTTTACTCTGAACGTACAAA 655 28 100.0 32 ............................ ATCATAGAGACAATCAGACTCATCAGACTCTT 595 28 100.0 32 ............................ GACACAAACACGGTCACAACATTACTTGCAAT 535 28 100.0 32 ............................ TAACACCTTCAATATAGCTAAGATTGATTCTT 475 28 100.0 32 ............................ CAGAGAGCCACAGAGAGGCTAAGCAGTGGGTA 415 28 100.0 32 ............................ TTGCACCATTGCCCGAGCTAGTAAGTTGATAT 355 28 100.0 32 ............................ AAGCAAAAAACACGGTTCAAAAGTGTATGAAT 295 28 100.0 32 ............................ TTTAAGCGTTGCTCTTATTCTTAAAACACCCT 235 28 100.0 32 ............................ TGTTTGCGGTGAATGTGACGGCAGTGGTTTAG 175 28 100.0 32 ............................ TGAGCGTCCAACAACGAACGTTTAGAACGTGG 115 28 100.0 32 ............................ ACTTTGGGCGCTTTGTATTGCATCATCAAATA 55 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : A # Right flank : AGTTAAATCTATTTTTAACCGCCCGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25-413 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000231.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 33 ............................ CCAAAGGAATGAAGGGGATACAACTTGACCACT 86 28 100.0 32 ............................ AAGAGCCTGAAATGAACGATCTAGACCGTGTT 146 28 100.0 32 ............................ AGACTTCAATATAGGCAACGTTAGAAGCACGT 206 28 100.0 32 ............................ ACATGATGGCATTGCAAATCAGCTCTATGCCA 266 28 100.0 32 ............................ GCACCCGCTAAATGTCACGCACTGGCGCAATT 326 28 100.0 32 ............................ ATAACAGCTTTAAATGCTGCGGCAGTAGTATC 386 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAAACTCCCTAAGCTCTCCGCGTGG # Right flank : ATCCAAGAAAGTTGATTAGGCTCCCAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1854-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_BADT01000230.1 Pseudoalteromonas sp. BSi20652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1853 28 100.0 31 ............................ AAACTGGTGATTCAGTAATGCCAGCCTTCAC 1794 28 100.0 31 ............................ ACTGTGTAAGGGTCTAACAATCGATCAATCT 1735 28 100.0 32 ............................ AAACAAAGGCACCTTGTAAGCATCAATAGTCA 1675 28 100.0 32 ............................ TGAACTGAGGTGTTATTTTCATTGTTCTCATT 1615 28 100.0 32 ............................ TGCAACGCTATTTCATCGCCAACGACTTCACG 1555 28 100.0 32 ............................ GCCACCACAGAAGATGGAGAAAAAGGCATGAT 1495 28 100.0 32 ............................ GAGCGGAGTTGTTACGCTTGTCGGCACTTCTT 1435 28 100.0 32 ............................ GTCCAGCGTTCGAACAACACGGTCTAAGTCGT 1375 28 100.0 32 ............................ TATCACAATATACTGTAAGTAATATTCGATCT 1315 28 100.0 32 ............................ TATTTAACCATCCTAACCTAACCAACCCTATA 1255 28 100.0 32 ............................ TTCAAATTTGTTAACCGTTCCAATTGAACAAC 1195 28 100.0 32 ............................ GTGCTTAGTAATGTACGTGCTGCGCGTCCTCT 1135 28 100.0 32 ............................ AGTACCGGTGTTTTTGCATGATGTTCACAGCC 1075 28 100.0 32 ............................ CTTAACTACAATTTCAACGTCAGAATCTGTTG 1015 28 100.0 32 ............................ GACTCAGTTGATGACGCAGTGTGAACACCATA 955 28 100.0 32 ............................ GACTGCTATTTGCTCAGTTGTTTTAAAGTTAA 895 28 100.0 32 ............................ AAGCAACGTTTGTTAACTCATTCCTGGCACTA 835 28 100.0 32 ............................ AGTTAAGCAAGACATGGCCAGCGGTAACGAGT 775 28 100.0 32 ............................ TTCACCGTAATACTCCGCAATGATGTCGTTTA 715 28 100.0 32 ............................ GTCAAGCTGCGCGCAGTCTTTCAATGAAAAAC 655 28 100.0 32 ............................ ATTTACAAAATACTCAGCAATACGTTGATCAA 595 28 100.0 32 ............................ AAGTAAGTTCAACGCCTATGATTTTACTATTA 535 28 100.0 32 ............................ TGTAGAGGGTGTTAATGTTAAAGTAGCTGTTC 475 28 100.0 31 ............................ GCAAATGAAAATAAGGCTGAGTAACTTCTAG 416 28 100.0 32 ............................ TTGCAAGTTAACAATGCTAGATTGAAGCTTAA 356 28 100.0 32 ............................ TCATATGCTACTTGTGTTTGGTCTGCCGGCTC 296 28 100.0 32 ............................ AATGCGCCAGCCCCGCGTCGCGGTCTGCTTTG 236 28 100.0 32 ............................ GCAATGGGCCAAACGCACGCGGGCATACTAGA 176 28 100.0 32 ............................ TTCTTGAATCCATTCGTTGATTTGTTTTTGCT 116 28 100.0 32 ............................ AGTAGGTGAATATTCCACTTGTGACGAATTTC 56 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 31 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GACTGTTGCCGTTGTTGA # Right flank : ACATATTGACGCAGAAACCTAGAACCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //