Array 1 539-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRL01000034.1 Listeria monocytogenes strain CDPHFDLB-F15M01712-1' F15M01712-1_Contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 538 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 472 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 409 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 345 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 280 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 216 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 151 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 85 29 75.9 0 ......T.C.A.C...CA...T....... | G [61] ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : TGCAGAAGCAGCAAAATAACCAAAATTAATGACTTTCGTTTTAATTTCTTAAGATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 45959-45281 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRL01000017.1 Listeria monocytogenes strain CDPHFDLB-F15M01712-1' F15M01712-1_Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 45958 29 100.0 36 ............................. TTCATTACAATACGGATAATATTCATGTTCATATTG 45893 29 100.0 35 ............................. TCGCTTGTGTATAAACACAAGTCTACCGCAACACC 45829 29 100.0 34 ............................. TAACTTAAATAAGCATAAGGAAATGCCGCGCATG 45766 29 100.0 36 ............................. GTAGCTAGCCCTTGCGGTCCAGATGGCGCTTTGCCG 45701 29 100.0 36 ............................. ACAGTCGCATACTTAGCAATTCTTTTCATGCTATCC 45636 29 100.0 35 ............................. CGGGGAATATCTCTTTAAAGCTTAAATACGAATGC 45572 29 100.0 37 ............................. TTATCAAAAACTTCAGCTAAGGTTGCGGGTAGTAATT 45506 29 100.0 36 ............................. TCAACAAGCGAACCACTAACGCCCGGAGCGTCTAAA 45441 29 100.0 37 ............................. TACAACATGAGCTGGCTATTCTCTTCTGCTGAAACAG 45375 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 45310 29 93.1 0 .......................C....C | A [45285] ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAAATTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGTGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGAGGATTAACGTATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAAATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGTGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAGTAGTGACATGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCAAAAAATAAAAAGGCCAGGACCCAAATCCAAGACTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCACAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTTGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCACCTGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //