Array 1 212548-211983 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFJM01000021.1 Ligilactobacillus animalis strain 14-7927 14-7927_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 212547 36 100.0 30 .................................... ACTTGATCAGGAATGTAGAACAACCAAGCG 212481 36 100.0 30 .................................... TTAAGGCCCGTTTGTATTTCCAGGACTGTT 212415 36 100.0 30 .................................... CAGTTACGCTTACGATCAATTCTACTTCAC 212349 36 100.0 30 .................................... TACGACAATATTCAAGATAAGCTTGTCAGC 212283 36 100.0 30 .................................... CTTAGCAGCAGCTGCTGGAACTTCTGCACC 212217 36 100.0 30 .................................... TCCGAACAAGCCTACTTCTCCACTTGGAGC 212151 36 100.0 30 .................................... ACCGATTGAAGAAACGCTTTGATGACGTTT 212085 36 100.0 31 .................................... CATTGTTAGTCTAATGGCTAAAGGCCTATGT 212018 36 80.6 0 ........................AA...TT.GT.T | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 97.8 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TGCGGATCTGGAAAGACAATTTGGTGAAAAAGAGGAAGTTAAAGCCAGACTTGAGTTATTAGCAGTGGAGATAGCAAATATTATTTCGAGTGAATGTTTAGAAAATGAGTTAGATCTTGAGTATGATGAGATCACACTGCTAGAATTGATAAAGGCGATGGGTGTAAAAATCGAAACGACGATGTCATCGGTTTACGAAAAATGTTATGAGATAGTGCAAATTTTCAAATACTTAAGTAAGAAAAAATTATTAGTTTTCTTAAATGTTGGTGCTTATTTGACAGAAAAACAAATAAGAAGCTTACTTGAGTACATTGAACTGTGCAATTTGAATGTCATATTCCTTGAGCCAAGTAAGTTGTATGACTTACCGCAGTATATTTTAGATAGTGATTATTATTTAGAGTATTTGAATAGCTCTTCGGAGTCATAGAAAGCGAAAATTTTGCTAGAATTAGTAGCGCGATTACGAAACCACTGTGCCATTTTTTGCATTTGAG # Right flank : TTTCCGGTTGAGAATATGTGCAATTGAAAAATATTTTTACAGTATTTCTATTGACGTCAACTTTATAATTTGATATTATATTAGCGTTGTATTTGTGCATGCCACAACTGCAACCGCACGTTTTAAGTTCAAGTGCTCTCTGAGCCACTACATTACGGCGAGTCTAAGTAAAATACAAGGAGGTGCACATTAATGTACGCAATTATTGAAACAGGTGGTAAGCAACTTAAAGTAGAAGCTGGTCAAGCTATCTACGTTGAAAAGTTGGCTGCTGAAGCTGGTGAAAAAGTAACTTTTGATAAAGTTGTTTTAGTAGGCGGCGAAAACACAGTGATCGGTACACCTTTTGTTGAAGGTGCTACTGTTGAAGGTACTGTTGAAAAGCAAGGTCGTGCTAAGAAAGTTGTTACTTTCAAGTACAAGCCTAAGAAGCATCAACACACAAAGCAAGGTCATCGTCAACCATACACAAAGGTTGTTATCGACGCAATCAACGCATA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 221994-222493 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFJM01000021.1 Ligilactobacillus animalis strain 14-7927 14-7927_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 221994 36 100.0 31 .................................... CAGAAGCAGCAGCTGCTGGAACTTCTGCACC 222061 36 100.0 31 .................................... TCACGGGTACGGGACACCTGGTGGTTGTTTT 222128 36 100.0 30 .................................... GAACGAGACAAAGCTAAAGCAAAGGTAGAC 222194 36 100.0 30 .................................... TAAAGCTGATTTGATATAATTATCCAAGTC 222260 36 100.0 30 .................................... CGATACAATGAATACAGTTCTTATCAACAT 222326 36 100.0 30 .................................... TAATATCGATTTAACAGGTTTGACAGACGT 222392 36 100.0 30 .................................... CGAAACATCGCAATCTGATGCTGATTACGC 222458 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TATTCGTCTAATTCCATTGTTTTGATCCTGTCAAGTGGCCATTCTTTCAAAAATTCTTTTGCCAACTGCATATTTTGTTTCTTCCATGCCTCTGCTCGTTTTAACAGTGCTGATTTATTTTCAAAATACCAATCCGAAAAGTGTTTTATATCGATTTTTACCATCCTGTCACCCCATCGTTTTTATATAGCATACAATAAGCTTAGTAGCCGATGCACCTAAAACGCATATAAATTTAGACAAAAAAGTTCCATTAGAAAATTTTTCTAATTTCTTAAAAAGCATCTCAATAGTTAGATAGTGACTCTAACAATTAAGATGCTTCATATTAATCTAGTACTGAAAATTTTAGACAGTTATATTTTGGCTTAACGTAGTGTATAATTATAATTGAATTATGTATTACGTTAATGAAAAAACATGGAATCATACAAAACTGAAATCTTGCTAGGATAAGTAGCGCGATTACGAAACCAAAACGACATTTTTTTGCATTTGAG # Right flank : CAAGCGAAGAGATTGGCGAAGAGCGTCAATAGTTTTTTTGCATGACTCCATAAATGAGTTAGTGCACTAGAACATACTGAATTATTTTAGAACTATTATTTAACGGCTTGATTCTTTTAGCAGAATCAAGTTGTTTTTTGTGTAATCACAAAAATAATATGATGGTGTTTTGAAAAATCTTATGTTGTATCCTACAAATAAAAACTAGCATGTTGACCTCTGTAATACTTGATAGACAGCAAAAAAGCGCCTAATCAATAGGCGCTACGTACTTACCTGTTAGCACACTTCCATTTTTCCAATCCTTTAAATACCAGGACAACACTTGCAATCACTAATAAACTAACTAAAATATTAACGACTAAGTTCACTTCAGCAGAAGGCATCAACTTAGCAATAAACAAACTATAAAAATACTGCGTGATAAAAATAGCAACTACAATGGCAATACTCATTTTATCTTTCATGTTCAGGAGCCTCCTTGTGATCACAAAGACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //