Array 1 93-1768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCWL010000162.1 Escherichia coli strain 1684-49 1684-49_S12_L001_NODE_166_1950_cov_15.051015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 154 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 215 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 276 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 337 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 398 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 459 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 520 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 581 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 642 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 703 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 764 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 825 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 886 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 947 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1008 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1069 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1130 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1191 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1252 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1313 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1374 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1435 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1496 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1557 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1618 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1679 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1740 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72105-71466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCWL010000017.1 Escherichia coli strain 1684-49 1684-49_S12_L001_NODE_17_81069_cov_17.480949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72104 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 72043 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 71982 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 71921 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 71860 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 71799 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 71738 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 71677 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 71616 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 71555 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 71494 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //