Array 1 1699947-1699053 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR800290.1 Streptococcus salivarius isolate commensal strain from anonymous patient (individual 4), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1699946 36 100.0 30 .................................... ATGAACGTACACAAGAGATTGCCGAAAAAT 1699880 36 100.0 30 .................................... CGACTACTTTAATACCATTGCTGAAACGCT 1699814 36 100.0 30 .................................... GACTTCCCAAGACCTTCCCACCGCTGCATG 1699748 36 100.0 30 .................................... ATCAATGTTATTGACATCACCTACAACTAC 1699682 36 100.0 30 .................................... GTCTGGCTTATAGTTAGCGCCTACAACAAA 1699616 36 100.0 30 .................................... TGTATCAGTTTCAGTTGTTACAGCGGTTGT 1699550 36 100.0 30 .................................... TCATGCCTATCTCCAGCACTTGGAATTTGT 1699484 36 100.0 30 .................................... ACCCAAAACCCTGCTCGTCTGCAAGGCAGA 1699418 36 100.0 30 .................................... AAGTCGAGTTAAGGCTGCTGGACGTAAGCA 1699352 36 100.0 30 .................................... AAAATTAAGAGTAAGTGACGATAACGTGGT 1699286 36 100.0 30 .................................... AATGGAAAACTATATTATTAAACTGGAAAA 1699220 36 100.0 30 .................................... TACAGAAAACTGTTGACATAAGATACAGTA 1699154 36 100.0 30 .................................... TTCCCCAATATCTTGTTTTACTGAACGTAC 1699088 36 80.6 0 .............A......TA.......T..CTC. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.6 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAGAACGAGACGATGATATTTTCTTTGAAGTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTACAGACTATCTGTAGTTTATGAATGAGTAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAAAAGCCTAACTCTTATCTTGCAAGGGATAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTGCAAACGCAAACTTCGAGAATATCCACGCGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCATTTCGCTCCCCTAGTTCTTGACTTGACTGTTTTAGAGCTGTGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGAATGGTTCCAAAACCTGGTGCTACAAATCCACTTGATGACTACA # Right flank : CCCATTGTAATGATTTTGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAATTTTCCTGATTTTGGTCGTAGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAGAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1700510-1700144 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR800290.1 Streptococcus salivarius isolate commensal strain from anonymous patient (individual 4), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1700509 36 100.0 30 .................................... TAAAGGCTTTGATGGTATTTTAGAAAAGAA 1700443 36 100.0 30 .................................... AGAACGAGACGATGATATTTTCTTTGAAGT 1700377 36 100.0 30 .................................... TACAGACTATCTGTAGTTTATGAATGAGTA 1700311 36 100.0 30 .................................... AAAAGCCTAACTCTTATCTTGCAAGGGATA 1700245 36 100.0 30 .................................... TGCAAACGCAAACTTCGAGAATATCCACGC 1700179 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTAATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTTGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCTGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAGACAGTCTACGAG # Right flank : CATTTCGCTCCCCTAGTTCTTGACTTGACTGTTTTAGAGCTGTGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGAATGGTTCCAAAACCTGGTGCTACAAATCCACTTGATGACTACAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACATGAACGTACACAAGAGATTGCCGAAAAATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCGACTACTTTAATACCATTGCTGAAACGCTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGACTTCCCAAGACCTTCCCACCGCTGCATGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACATCAATGTTATTGACATCACCTACAACTACGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //