Array 1 274-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLMH01000103.1 Escherichia coli strain MOD1-EC5537 MOD1-EC5537_107_length_273_cov_72.0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 212 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 151 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 90 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : G # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25827-26834 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLMH01000076.1 Escherichia coli strain MOD1-EC5537 MOD1-EC5537_77_length_37820_cov_65.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 25827 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 25888 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 25949 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 26010 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 26071 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 26132 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 26193 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 26254 29 100.0 33 ............................. CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 26316 29 100.0 32 ............................. CCCCGCACACGTAAAGGCGTCGGCATGGATGC 26377 29 100.0 32 ............................. CCGAGGCCGCAGAACGCCGTGATATTGCGTTC 26438 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 26499 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 26560 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 26623 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 26684 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 26745 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 26806 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //