Array 1 3-1053 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIH01000149.1 Acinetobacter baumannii strain Abau462 Abau462_S75_R1__paired__contig_44_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 30 ............................A. GGTAATACAATTTAATTTCTATGACTTCCT 63 30 100.0 30 .............................. ATTATTAAATTGCTTATTTATATAGTTATT 123 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 183 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 243 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 303 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 363 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 423 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 483 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 544 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 604 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 664 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 724 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 784 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 844 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 904 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 964 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 1024 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 18 30 93.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TTG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-319 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIH01000103.1 Acinetobacter baumannii strain Abau462 Abau462_S75_R1__paired__contig_709_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 50 30 96.7 30 ............................T. GCTCATCAATACAGCTACAAGAAAATTTGT 110 30 96.7 30 .............................G CATAAGCATAAAAATTATGTGTGAATATCA 170 30 96.7 30 .............................A TATGCAACAATAGGAAATTGCTGAGCATCT 230 30 100.0 30 .............................. ATAAAGCAGATTTGGAGAAGGTAACGAATA 290 30 93.3 0 ............................GA | ========== ====== ====== ====== ============================== ============================== ================== 5 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : CATACGCCATTTAGAAATTCCAAAGTCTTGTTCAATATCTTGTTGTTGAG # Right flank : GGAGAAAGAT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //