Array 1 15983-16876 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNFW01000030.1 Lactobacillus jensenii strain UMB8489 NODE_30_length_23771_cov_9.507613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15983 36 100.0 30 .................................... CGCAAGTGTCAAAAATATTTGGTTTGTTTT 16049 36 100.0 30 .................................... ATTATTCATAAAGTTAATTAGTTAGAGAGG 16115 36 100.0 30 .................................... AGGAGAACCAGCCACTATATCAGTCATTTG 16181 36 100.0 30 .................................... CACATTTGCATAAATATTGCCATATTTTAC 16247 36 100.0 30 .................................... AGTAGAAGGTGAATTTATTATGAAGCCTGT 16313 36 100.0 30 .................................... TTCTGTGGTTGTTAAGGTATCAATCTCACT 16379 36 100.0 30 .................................... TAAATTTCGCAATGAAATTGACTATGAAAC 16445 36 100.0 30 .................................... AGTTTCAAATTGTTGATGACATTGCAGAAT 16511 36 100.0 30 .................................... AATTTCTTTAATTTCCGGAACACCAGCAAT 16577 36 100.0 30 .................................... ACTACTTTCAATTTCTCTGTCAAGCTTCTT 16643 36 100.0 30 .................................... TACGCCTAGTGGCTATATTGACTTAACTAG 16709 36 100.0 30 .................................... GGCTAAAGACAATAAGATTAATGTTTCTAA 16775 36 100.0 30 .................................... AAAAGTAGTCGATGAATATTTAAGGTTAGT 16841 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCATTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG # Right flank : AGTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //