Array 1 588637-585666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028435.1 Shewanella putrefaciens strain WS13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 588636 28 100.0 32 ............................ AGTCACGAAAGCTGCTACAGGCCACGCATAGC 588576 28 100.0 32 ............................ TTCACGGATAGAGAAGGCTTCTCTTAACAATC 588516 28 100.0 32 ............................ TCTGAGATTACTCTAATTTGCGGTACTGAAGT 588456 28 100.0 32 ............................ ACATTGACGTCTAAGCCACTTGGTTTTAGCTT 588396 28 100.0 32 ............................ CACCAGTGCAATAAGAGTTTCCTCAGCCGAAA 588336 28 100.0 32 ............................ TTATATGGTTCGTTCTTTAACTACTGGTAAAA 588276 28 100.0 32 ............................ ATGCAGCTAATCCCGCAATGCACCATGTGATC 588216 28 100.0 32 ............................ TCAGACAGATAGGAAAAAATCAGTTCGTTGGT 588156 28 100.0 32 ............................ TCTAAGTCATTGAATACCATTGCTTATCTTGT 588096 28 100.0 32 ............................ AATCGCATTTTCAACATCACGCATACGCAAAA 588036 28 100.0 32 ............................ TATCAAAGTCGGGCATCACAGCGAAAGTCGTC 587976 28 100.0 32 ............................ ATTAGTAACATAGGTGTCACCAAGCCACGCCA 587916 28 100.0 32 ............................ GAGGTACGATGCCGAAGGTTTTAACGAAAAAC 587856 28 100.0 32 ............................ GTCAAGTAAAAATAAGACTGCACCAAACAAAT 587796 28 100.0 32 ............................ CAGCCTTTAGGCCGCAGAACATGGACTAATCC 587736 28 100.0 32 ............................ AACAACTCAGAACTAGGATTTTTAAAATCAGA 587676 28 100.0 32 ............................ TTCACCCTCAATATCGCGGTCAAAGGCTTCTA 587616 28 100.0 32 ............................ AGTACCCCTTCCATTATCAAATTCCCGCAAGC 587556 28 100.0 32 ............................ TTTGCGCCAGAAAGCACGAGATTTATAGATAA 587496 28 100.0 32 ............................ ATCGGGGCAATCATACCCCGACGGGGATGTTG 587436 28 100.0 32 ............................ TTCGTGCGGAGCTGGGCTAGGTTTTGGGGCTC 587376 28 100.0 32 ............................ TTTATTCCCGCCGTGAGCATTTCCCTGTAGCC 587316 28 100.0 32 ............................ AACAGGAAGTATTCCTTGGTGAACGTAATCGC 587256 28 100.0 32 ............................ GTTGGAGGACACACCTTTGATAAATCAACTGT 587196 28 100.0 32 ............................ TTTTGGCAAGTCCCAATCATAGATTGGATCTT 587136 28 100.0 32 ............................ TTAACCCCGGTTCGCAAGATTCAGCATACGTA 587076 28 100.0 32 ............................ CGATTGGTTAACATCACCGGTTAGTGATTTTT 587016 28 100.0 32 ............................ ATTTTGTACGTTTCGGTCGTGTCAGGGAAGTC 586956 28 100.0 33 ............................ TTCCGTGCCGATAGCCGCTTCGAACGTTCCGAT 586895 28 100.0 32 ............................ TATAAGCGCACCCATCTTTAGGGGTTTCAGGC 586835 28 100.0 32 ............................ ATTGCAAAAAGAGATCAGCGACAACATAACGT 586775 28 100.0 32 ............................ TGCCAGCCCTGAAACCACAATAGACTATGTTG 586715 28 100.0 32 ............................ ACTGACTTCTGGCGTGGATATTAGTTTTTTAA 586655 28 100.0 32 ............................ TGGTAGGAGTAAGGCTTTAATATTATTAGTAA 586595 28 96.4 32 ..........G................. ATCGCCCGTGATAGCATCAACAGCGGCACTAA 586535 28 96.4 32 ..........G................. TATAGCATTTTCTACATCACGCATTCTAAGAA 586475 28 96.4 32 ..........G................. TTGCGATATTAATAACCGCATATAATCTGCTA 586415 28 96.4 32 ..........G................. TTGGCGATTCTGGTAATGCTCGGTTAAGGCGA 586355 28 96.4 32 ..........G................. GCATCGATAACGATGCTTGGCTCTGCTGGTGC 586295 28 96.4 32 ..........G................. ATTAGAAGAATTATAATGATTAGTGAACTGTT 586235 28 96.4 32 ..........G................. TGTTGAGGCTGGCGAGTCTGTTACAGCTAAAC 586175 28 96.4 32 ..........G................. GCTCCGCTAAACATCAAGGGGATAAATCCCCT 586115 28 96.4 32 ..........G................. CAGATGACAATTTCGCACGCTATTCAACTTAA 586055 28 96.4 32 ..........G................. TCAATTACAACGCTTGGATTATCCATGTTTCG 585995 28 96.4 32 ..........G................. TGAGTCGGTTTCATCATTAATTTCATCTAATT 585935 28 96.4 32 ..........G................. GTCATCTGAAATCTGTGACTTCTTGACGTTTG 585875 28 96.4 32 ..........G................. TTGGAGTTGGTGATGATTTTGAAGTGAACTCT 585815 28 100.0 32 ............................ ATAGCTCAAAGCCAGCATGCCACTCTGCATTA 585755 28 92.9 32 ..........G..............C.. TTCGTCATCAAACTTAAGCTGGATAGCCTGAG 585695 28 85.7 0 ..........G...T.....T.....T. | TG [585671] ========== ====== ====== ====== ============================ ================================= ================== 50 28 98.6 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGATATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCATTTATCAACTTGCGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : TAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCTGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGATTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCTAAAGGTAATTTGGTGATTGAGGCGGGCACGGGGTTGGAAAAACCTTTGCCTATTTGATCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1933993-1934500 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028435.1 Shewanella putrefaciens strain WS13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1933993 28 100.0 32 ............................ TCTGGATCAATATCAATATCTACTTCAGCAAA 1934053 28 100.0 32 ............................ TAGAAGCGCATGCAGGCAATGGGTGAAGACAT 1934113 28 100.0 32 ............................ AGAATCATAGCCTTCTACATTGTGCAGCGGAT 1934173 28 100.0 32 ............................ TGCATCGTCATTAGCTGGCAATTCAGGCTTAG 1934233 28 100.0 32 ............................ TGCCATATCGGCGGCGGCATCAATGTAATTTT 1934293 28 100.0 32 ............................ ATTTTAGGAATAAATCATATATTTGTAGTTAA 1934353 28 100.0 32 ............................ CAATTGAGATTACTTTGGCTGGTTGTCGAAAC 1934413 28 100.0 32 ............................ AATCATCGACATTAATACCGATGAACTTTATG 1934473 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGGGGTCTGCAGCGATAACCAATTTGTAGAACGCTATAACCAAGGGCATCAACAGTATCTCGTCAATAAGCGTTTGGCGGAAATCGCAGACCGTTTACACACTATTGATAGTGAGATCAGCAGTATTAATACCAAACTCAATAATCTCACCGATAAAGCCGACTTATTAAGGCAAAAAAATATCCTCTTAAATGAAAAAAATCATCTTCTAGATGAAAAAGCCCGCCTACGCCAAGGAAATATTGAGTTTAAATTTAGATTCTAACCATAAAAATCTAGCCATCCACAAAGCCAATTCAAAAGAGTAAACCCAAACAAAAATGTTAAAAGGAACAAGCCGTAAATAAGGCTATTTTAGGATGACTCACCCATACTTCTATTGCATTTAGAAATAAGCTATAAATACAAAAGGTTACAATAGATGATTTTTAAGAAGGTAAAAATACGTTTTTTATCCTAACTGCCTGTTGTAACTTTATTTTATTGATTTATTCTACA # Right flank : GTCACCAACAATGCAAAACTGATCTACTTGTTTTCACTATCAAAGATGGGACATACCCAACTCTCTATGGATTAACAATCAAAACCGAGGTGACAGTATTTTACTCTTCCCTTCGAAATTGCCTCAGGGCATTTGCGTTCGTTGCGTGAGCGAGGCATGGTCATTCTCGTGCATATCTGGACCCATCCATTGCACTTCACAACATTCAGGCATCTTACCTATCAGATACCGAGATAGCGTCAGTCGAATCAGGGACGAGCAGTCCTTCTTGGTCGACTCTTGATTAAGAATAAGGAGGGAAAGCCCCACGACTTTTATTCACCTCGGCCGTAAGGCCGCAATGACTAACAATGTAGAAAGATGGGACACTCTAACCACCAGCAAAAGTATACGATGTTACACTTTTAGTAACTATTTCAGTGCTTAAATCTCAAAAAGTGTAGCTAAGTACACCTGAAACTTACCCAAGTCACCAGACCAAAAAACAAAACCCCAATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //