Array 1 42893-44263 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNM01000008.1 Escherichia coli strain BX2S26 NODE_8_length_196361_cov_107.723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42893 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 42954 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 43015 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 43076 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 43137 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 43198 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43259 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 43320 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 43381 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 43442 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43503 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43564 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43625 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43686 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43747 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43808 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 43869 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 43930 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 43991 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 44052 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44113 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44174 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44235 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69369-70311 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNM01000008.1 Escherichia coli strain BX2S26 NODE_8_length_196361_cov_107.723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69369 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 69430 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 69491 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 69552 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 69613 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 69674 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 69735 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 69796 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 69857 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 69918 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 69979 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 70039 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 70100 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 70161 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 70222 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 70283 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //