Array 1 403197-403590 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEV01000001.1 Salmonella enterica subsp. enterica serovar Kiambu strain 96-0338 NODE_1_length_528447_cov_2.92288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 403197 29 100.0 32 ............................. GTAATTTTACCAAAAATTCTTTCTTTTTCTTC 403258 29 100.0 32 ............................. CCGCCAGTGCCGCCTTTAGAATATCTGTATTA 403319 29 100.0 32 ............................. GACGTATTGATAGTTTAGACAGTAAAGTTGAT 403380 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 403441 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 403502 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 403563 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTATCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAACTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 419731-422751 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEV01000001.1 Salmonella enterica subsp. enterica serovar Kiambu strain 96-0338 NODE_1_length_528447_cov_2.92288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 419731 29 100.0 32 ............................. CGCCCCTCATCCACCAGGGCGATGTGATTCCC 419792 29 100.0 32 ............................. TGGTAGCCGACGGGCGTATTGCGGGGTGCATA 419853 29 100.0 32 ............................. GCTGTTTTGACTTTGGATCGTGAGCAGAGCGT 419914 29 100.0 32 ............................. CGCGTTCAGACATTTATCAAAAAACGCGACGC 419975 29 100.0 32 ............................. TTTGCCGCCTCGTAGTAATCCACCAGGCCAGC 420036 29 100.0 32 ............................. TTTTGAGAAATAGCCATCTTTTTTAACTAACT 420097 29 100.0 32 ............................. CGAACGGTGCTGAAATTATTGAAAATGCGGTA 420158 29 100.0 32 ............................. ACAGTTTGTTGAAATCTACGACTTGAGGACTA 420219 29 100.0 32 ............................. GACAAACGCGCGGCTGGAGTCAGGATCAGATA 420280 29 100.0 32 ............................. GACGACAGTTATATGAAAACGCATTGAGCGGT 420341 29 100.0 32 ............................. TTATCGATCGTCCAATCGACCTGCATCTCGGT 420402 29 100.0 32 ............................. CGATTCCAGGCGAACGCGCGTCTCAGCAGGCA 420463 29 100.0 32 ............................. GACACTGGTCTATTATCGCCCACCGGAAGAAT 420524 29 100.0 32 ............................. CCGCACCGCTGGACAGTCGAAGAACTGGCAGA 420585 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 420646 29 100.0 32 ............................. GTATCGATCAACACTAATTCGCCAGTGTTCAG 420707 29 100.0 32 ............................. TGGCGCCGTAGGGGGTTGCAGAATTTTATAAA 420768 29 100.0 32 ............................. GCGAACCCTCATCTGTTACTGGATCAGTGCGT 420829 29 100.0 32 ............................. AATTGCCCTTGCTGCCCGGCTCTTCTACGGTC 420890 29 100.0 32 ............................. CATCCAGACGAAAAAGCGCGTTTCGCGGCGCT 420951 29 100.0 32 ............................. CTGGTTGTTGGCTTTTACATGGATTCTGGTCT 421012 29 100.0 32 ............................. CGGCTAACGAGTGTCGCCCGTGGAAACGTAAC 421073 29 100.0 33 ............................. GATCGCTCCGTTCGCGTCGAACACCCGGAGGGG 421135 29 100.0 32 ............................. GGGGAGAGAGGAAAGGGGGGTTTGGGGGGTAT 421196 29 100.0 32 ............................. ATCGTTGTGGTCCGCGTTGCTGAGGACGAGGA 421257 29 100.0 32 ............................. CGCGACAGCGCGTTTCACTGCATCGTCCATAA 421318 29 100.0 33 ............................. CCAGTCAGCACCAGACCAGAAGCCGTTAACCGC 421380 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 421441 29 100.0 32 ............................. TTCGTGCTTAATAGAGGAGGCTGGTTAGATAT 421502 29 100.0 32 ............................. GCGGGACTGTTAGGGATAGACCCCGGAGATTT 421563 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 421624 29 100.0 32 ............................. ACCAGATTAAAGTCGGTCTGGAAATGGTCATG 421685 29 100.0 32 ............................. TTATCTGGACAGGTGACAGCGAACACGAAATC 421746 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 421807 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 421868 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 421929 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 421990 29 96.6 32 .............T............... CCGGGTGCACGCTTTTATTTTTTATGACTCCC 422051 29 96.6 32 .............T............... CAATTTTTAACGATCACTCAGATAAAACAGCA 422112 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 422173 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 422234 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 422295 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 422356 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 422417 29 96.6 32 .......................T..... CACTTGTAATTCTTCGAGTTTATCGATGAATT 422478 29 100.0 32 ............................. ACGTTTATTCATCAAATGGGGAGATTCTGCTG 422539 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 422600 29 100.0 32 ............................. TTCCGCCATGACCGTTTCGGCCTCCAGCTTTC 422661 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 422722 29 96.6 0 A............................ | A [422748] ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGTGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //