Array 1 81645-81944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011014.1 Limosilactobacillus mucosae LM1 plasmid pLM1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 81645 36 100.0 30 .................................... TAGGTTGACAACCCATTTTCGATCTATTAT 81711 36 100.0 30 .................................... TCTGTTTCTAGTCGTACCCGTGAATTTCTC 81777 36 100.0 30 .................................... CTATAGCAGCCCAAAAATGCGCAAGATTCA 81843 35 91.7 30 ................-................A.G ACAATAACAATCTAGAAATATGTGAGATTG C [81857] 81909 36 75.0 0 ...T.G.G.....A..T....G......G.GT.... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 93.3 30 GTTCAATACCTATGTGATTTGACATAGGTAACGGAC # Left flank : ATTACAACTTTTAAATCAACCAATTTTTAGTCCGAATGTATTTTTCATAAATGAGAGTGTAAAAACTCTCCATATCACCCCGTAGCCTAATGGCGAGGCGGGTCGAAATCTTAACACCGAAGTGTATGAGAAGCGGTGGGATTGGGAAATGGACGAACGTCCCTAGTCATACTATGGGATATAGTCCTATGCCAAGATGTTGGCTACCATGAAAGTAGACTGAATAAGCTGGTTCGATTCCAGTCGGGGTGGTTAGCGGCAGTATCTCTACGGGGACTGTTGCGACAAGACAAGCACGTGCTGGAGAACGTAATGGTTGCTATCAAGGTTCGATTCCTTGAACGTTCATTAGGCTCGCCGTGAGCCGTGGTAATATAACCTCGTAAGACTTTGGTTAGATTATTATTAATCTGATTAAAGCAAGGGTGTTCCCAAAAACCTTATATCGGACGCATAGGTAAATGGTGTTCAAAACTGAATACTAAATGAACGTAAGAACG # Right flank : CTTGATGAATTCGGTGCATCAGCACGTCATAGGTAACGGATGCTAGGGAGGTGGAACCATGACCAAAGAATATAAAGGAATTAAAATTCGTATTTATCCCAATAAGCAACAAGCTAATTCAATTGATGAATTTGGAGCATCGGCTCGTCATATGTGGAATGAATTGTTGGCTATGCAAAAAGCACGGTATCAAGCATTTAATGAAATGTATGGTGATGCCGATGAAGAAACCAAGAAAATTCATCGCAAAGGCGTGTATGTTCCCAAGTTTGGGATGACTTATCTTTTAAAACCTTTCAAGCAAGAACAGGGACATGAATGGGCAAAACACATGCCGTCACAGGCGCTTCAGAATGTGTGCAGTGATGTAGATGCCTCGTTCCAAAAATTCTTTGCAAAACAAGGTGGTTTTCCTAGGTTTAAGTCATGGCGACAACACAACGATTCATTTAGCTTTCAGCAAGGTTGTGTTGCATTGGACGAGCATCATATCAAGTTTC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATACCTATGTGATTTGACATAGGTAACGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 83455-83754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011014.1 Limosilactobacillus mucosae LM1 plasmid pLM1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 83455 36 100.0 30 .................................... ATAAAAGCCACATTTTATTGAGCAGTCATT 83521 36 100.0 30 .................................... TAAGGACGTTAGCTTATGGTGAACGGACTG 83587 36 100.0 30 .................................... TATAGCCCAGTGCCGTCAACATCTGCTAAA 83653 36 91.7 30 ......C........G..A................. GAAGAACGTTTGCAACAAATAAACGTAAGG 83719 36 80.6 0 .............A.GG.A...CG...........T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 94.5 30 GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC # Left flank : TTTAAAAGCGTCAAATATGATGAAAAACCATAATTTGGCACGGTCAATTGCAGAAGCTAGTTTCTTTGAATTCAGACGTGAGCTTGAGTACAAGTGCAAGTGGTACGGTAAGCAATTAGTAATAGTCGCACCCAATTACACTAGCCAGATTTGTTCTGATTGTGGTTTCCATAGCGGTAAAAAAACTTTGGATATTCGTGAGTGGGATTGCCCTAATTGTGGTGTACACCATGACCGTGATATTAATGCCGCTAAGAACATCCTTAATAAGGGATTAGAACAACTCAAAAACGAAGTGTCTAATAAGACTAAGAAGAAAACAACTAAAAAGAGCAACAAGAAAGTTGCTTGATTAATATAAAAAGAGTTTTAGGCTTGGCAGAAGCCTTGGTAATATAGGCGTGTAAGACGCTATGAGTTAGCTTTGTGCTAATGAATAACGCAGTGCTGTTCCCAGAAGCCTGTGTCTAACAATTGAATAGGTAGTTGACTAAGTAATA # Right flank : TGAAACCAATACTATCACAATGACAAATATATTCATGATAACAAATTGTATATCGGTGATATGCTAAAAAAGAAAGAGGTTGTGTAACTTGATTTATGTAAACGCTCCTATTGGTATCGGTAAAACTTCATTAACCAAGATTCTGACTAAAGACCTTGGGACTAAGGGATATTACGAAAATGTTGATGATATTCCGATGCTGCAAGACTTTTATAATGCGGGAGAAGATAGCCGCAAGCAATATTCATTTGCGTTGCAAATTGCTTTCCTCAACTATCGTTACCAACAATTACGTGAGGGACTATATCTTGCTGAAACGCAAGGTATGGCAAACACGGTATATGACAGCTCGTTGCTTTCTGATGGTTTGATGGCGTTTAATTTGTACAAGCGTGGCGAATTCCCACAAAACATGTACGACCTATATATCAATTTGAATCAAAATATGGTCGCCAATGTGAGTGGGCATCCCTTTAACGGGCATCCAGACTTGATTATCT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1306113-1305291 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011013.1 Limosilactobacillus mucosae LM1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1306112 29 96.6 32 ............................C TTTTGGCGCTGGCGAAACCTGATCGGTGTTCG 1306051 29 100.0 32 ............................. TCCATATCTGGCTATTGATGATCATGTTGCCG 1305990 29 100.0 32 ............................. AAAATAGCCAGCTTTTCGTCATACATAGACGG 1305929 29 100.0 32 ............................. ATGGTGTATCACAACAGCAAATCGCTGAAGGT 1305868 29 100.0 32 ............................. AAGTCCTCCCCAAGCGTTGAAATTGAACGATA 1305807 29 100.0 32 ............................. TCGGCATGGCAATTGGCAAGACCGATCCAAGG 1305746 29 100.0 32 ............................. CTTTGTCTAACTCTAATGTAGCGTTAAAGTGT 1305685 29 100.0 32 ............................. TCCAGGAGCACAAGAAAGAAATTGTTGACGAC 1305624 29 100.0 32 ............................. GAAGGCGCGGACTACTGGGACGATGTATTTTT 1305563 29 100.0 32 ............................. TTTACCGGCGGTGATACGGAAACATCTTATGA 1305502 29 100.0 32 ............................. GGTAAAAAGCAAAGCCATTAACACCGCCCGCA 1305441 29 96.6 32 ............................C TGTTCACACTGATTGTGGGTGAAAGCAATGGC 1305380 29 100.0 32 ............................. GTAGCATTGGCGTCAGTTTCGTTTTTGTTGTT 1305319 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : ACAAACAGTGAGATTATTTCAATCAGTGCAGTAAAAAGAACCAATGAACAACAAGTAGAGAAATTTAATCGATATATAAAAATAAAATCAGAAGTTCCAGCTACTATTCAAAAATTAACGGGGCTATCCAACGATTTTTTAAACTCAGAGGGTGAATCCTTAGAAAAAGTGTTGGAAGAATTTCAAGTCTTTATTGGTAATAATGTTCTAGTTGGTTATAATTTGCTTTTTGATCAAAGTTTTCTTAACGCTGCATTTATAAAAGCAAATAAGCAAATTATTTCAAATCGTATGATTGATTTAATGCCAATTATAAAGAAGGATCAAAAGTTTTTAGATAATTATCGGTTAGCAACAGTTCTTAAGAATTATGGAATTGAGAATGAACATCCGCATAAATCTATATCTGATGCAATGGCTACTTTGGACCTAGCGCTTAAACTAATCAAAAATGACAAACTAAGGATCTAAAAAAGGCGTCATATAGGGATCTGTTTACT # Right flank : TATGATGAACGATATTTATGACAAGTATTTTAATTAACCGTTGAGGAATTAATGATAGGTGCGAATCCTATCACGGTTGTCAGCTAGAATTTTTCTAGCTTTAAAAATAAATTTTAGGGTGTTGATAGAAATGTGGTTAAGTAAAAATGGTGCATTGTCGTTGGCTAATTCTGTTATTCGTTCGATTGCAAATGAATTAAATGTTCCAGCTGGTATTGCTGAAAGTGATGGTGTTTACTATTACGTTTGGCAAGCACCTAATGGTTCGCAATTGTATTATGAGGTAAAAGAAGAAACTATTAAGTTGGTTGCCAAAAATATGAATCAAAAAGGCAGATTGTAAAATTTAAGTTGAACATTTAAGTAGACAGAAAAGCCCATCAAGGTCTTTAATGGTGTTACCACAACATTCCATTAGAAAGAAGGACCTTAATGGGCACCACTATTTTATCATTCCAGAACCGCGTTGTCATTGAAACGCTTCATAATGAAGGACGTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1514092-1511617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011013.1 Limosilactobacillus mucosae LM1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1514091 36 100.0 30 .................................... TGGTATGTTTATATACTACAATAAAACTTT 1514025 36 100.0 30 .................................... AATCTACCGCAGATAAGCTCGTGCAGGGAT 1513959 36 100.0 30 .................................... ACTTGATTCAAAGTTCGGCGCGTCATCAAG 1513893 36 100.0 30 .................................... TGAAGGCTCAAAAGAGGTCTTCATTCCTAA 1513827 36 100.0 30 .................................... AACAAGTTGCGGTGGCGTCATATCGCGACG 1513761 36 100.0 30 .................................... TTAAGATTTCTAATTGCTGATTCCGGGCTT 1513695 36 100.0 30 .................................... ATTGATTTTTGTACGGCTGGATCAAGCCGA 1513629 36 100.0 30 .................................... TGCTTAGCCAGCTTAAAGTCGGCTCGACTG 1513563 36 100.0 30 .................................... AGCATTGGCAGTGCCAAGTGGCATGCTGCT 1513497 36 100.0 30 .................................... CAACACAGCCGTAAATACGATCAAAGCTGT 1513431 36 100.0 30 .................................... GCCAAATCAGAGTGAACATTGGCGATAAGG 1513365 36 100.0 30 .................................... TTAAAAACAAGAAGGCCCTTGAAAATCGCA 1513299 36 100.0 30 .................................... AGCAATAATTTCTGAAAATCTTGCGCCGGT 1513233 36 100.0 31 .................................... CGACTGCTTGTTTTCTTGGTAACCAAAGACT 1513166 36 100.0 30 .................................... CAGCACCAACGGCAATGATTGCAGCAGCAA 1513100 36 100.0 30 .................................... TGTACAGGTTGGAGCTTCTCAATTTCATTT 1513034 36 100.0 30 .................................... AACGCGTCAGATAACGATGAGGAAAATGGC 1512968 36 100.0 30 .................................... TTAAGAAATACGGCATGAGCGTTGATGATT 1512902 36 100.0 30 .................................... GTGCCTATTATCGCGAGAACGATCTTGAAG 1512836 36 100.0 30 .................................... AAAGTATCATAAAATATATAAAACAGTATT 1512770 36 100.0 30 .................................... GAGCTTGCACAGCAACCGCTTATTACGGTT 1512704 36 100.0 30 .................................... TCCCAGTTATGAGCATTCACGGGTTGAGGC 1512638 36 100.0 30 .................................... CACTAGCCGTGTGTAGGGCTTTTTCTTTTA 1512572 36 100.0 30 .................................... CGTGCCCAGCAGAACGTTGGGCGGGTCAAA 1512506 36 100.0 30 .................................... TAAGCTCAATAAATTTTGACAAAATGTAAA 1512440 36 100.0 30 .................................... ACGTGTGGAGTGGCTGGCGTGCCAAACTTT 1512374 36 100.0 30 .................................... TGGTCAAACGGCAAAGCGTTTTTCATTGAA 1512308 36 100.0 30 .................................... TAGCCGTTAGCAGTGGCTTAGCATAAGCCC 1512242 36 100.0 30 .................................... CGGCTATTCATAAAATCTGCTCCTTCAATT 1512176 36 100.0 29 .................................... GTAAGGTCCATTTTTTCACCTCTTAATTC 1512111 36 97.2 30 ...................................A CACTTTCTAGCTGTTTTAGCTAACTTTGCT 1512045 36 97.2 30 ...................................A CAAGAAACTATACAAACCTATCATAACCCG 1511979 36 97.2 30 ...................................A AGACACAATTAGACGCATTGAAGGAAGCTG 1511913 36 97.2 30 ...................................A TCGAAATAGCTAGCAGTTCCATAATCATTG 1511847 36 97.2 30 ...................................A TCAACGGTAGTAGTCTGCTCAATCTGTTTG 1511781 36 94.4 27 .................................A.A CTTGGGTGAATTGGCGTATTCGTACCA 1511718 36 100.0 30 .................................... AACTGGATCACCGCTCCAAAGTGAGTTATT 1511652 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 99.5 30 GCTTTAGATGGATGTTAAATCAATGATGTAATTCTC # Left flank : TCCGCCAAGCATTCGGGCATCAATTTACTCAACAAATTTGATTGAAGCTTTCAACAAAAAGTTGAAGAAGAAAATTCGCCAGAAGGAGCAGTTTCCAAATGAGGATGCCCTTCAACGATTCGTGACAACTCAAATTCTAGAATACAATGACAAGTTCGAAGAACGAGCACATCGTGGATTTCGAGGAAGCAAGGATACCTTGGATTCCATGTTTATTTAAGTAAGCATTTCATACAGAGAAGGATTTTCAAAAGTACACAAAATTATTGACACTCTCGACTGCCGCGTTTTAGCAATGAAGAACATCGCTAATTTTTTGTTGCCAGAACAATTTAAGGCTTTTCTTCAGCTGGTTGAAGAAAGTGGCCTAGCAGTCTTTCTATTGGAATTCTCAGAAAAACAACAGCGTGCATATTATCAAAACGCTGATGTTTATTGGATTGATGAAGATTTCGTTGATTGGCATCTCTAAATCGTTAGTTTTTGATTAGAAAATAACG # Right flank : TGACAAGGCGATTTTAAAGTATGGAAGGAAGATTAAGATGGCAAAAATGATCAGTGGCTCCGATGCAGTCTTAAAAGTAATTCGGCAATGGGGCGTTAAGCACATCTACGGTTATCCTGGTGGTTCTTTTGACTCCACGATGAACGCAATCTACAACCAACGTAAAGAATTGGAATTCATCCAGGTGCGGCATGAAGAAGCGGGGGCTTTGGCGGCAACCGCTGATGCTAAATTAACGGGCAAGATCGGGGTCTGCTTTGGCTCTGCCGGCCCGGGTGCCATTCACCTGCTCAATGGGCTGTACGATGCCAAGCATGACCATTTCCGGTTTTGGCAATCATTGCTCAGGTTCCTTCAACGCGTATGAATCTGGATTTTTTTCCAAGCAATGGATGAGGAACCGGCATTTGAGGACGTTTCGGTTTTGGAACAAGACGGCAATGACGGCGGAAAGTCTGCCCGCATGATTGATGAAGCGATTCGGCAGGCCTACAAGCATC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGATGGATGTTAAATCAATGATGTAATTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //