Array 1 398154-398641 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000003.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 398154 29 100.0 37 ............................. CAAAGAAGCTCCTCCCTCGCTTTTGTTTGTTGTAGTA 398220 29 100.0 37 ............................. ATGCAAACTTGGTATTATAGAGTAAGAGCAGGGAATA 398286 29 100.0 36 ............................. AGTAATGATGTTTTTCCACTTCCTGTTTCTCCTATA 398351 29 100.0 36 ............................. GAAGTTGATGCCTATCGATTAAGTAAACTAGCTACT 398416 29 100.0 37 ............................. TCTGTACTAGTCGCCCAACTATCCATACCAGCTGACG 398482 29 100.0 36 ............................. TAATAATTCATCAATATACTCAACGAATAATCTAGA 398547 29 96.6 37 ..........................G.. AGTATAATGTTGAAAAGTTAGAGGGTACAATCAAGAA 398613 29 72.4 0 ......C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTAAATGTCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAATTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATCTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATATGATAAGCTTTATCATTTGCACTACTAATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAAATGTTTATCATTAGTATCTGTACGCACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTTTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTAGCCATATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 508500-509054 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000003.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 508500 29 100.0 38 ............................. TAATTAATGGTGTTATAAGACTCATTTTTTGATTTTGC 508567 29 100.0 37 ............................. AATATTTTAGCTCCAGCGTCTTTAATATTGTTCCAAA 508633 29 100.0 37 ............................. CTATTAACAATGTTTGGTTTAATGAGTTAGCTTTAGC 508699 29 100.0 36 ............................. GCCTTTTTTTGTAATGTGGAAGTCAAAGAACTAAGA 508764 29 100.0 36 ............................. TTGGATTCAATGTCGTATGGTCAGCATTAAAATGTA 508829 29 100.0 37 ............................. TCAATTTTTCTATTTTTTGGTCTAAAAGTTTAATCGG 508895 29 100.0 37 ............................. TCAAATAATCTACGTAATGATTCTATATTTTTTAATA 508961 29 100.0 36 ............................. TTTAATTTAAAATATTCATAACATCCATCTTCACAA 509026 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : AGTAAGTTTGATGCTACATTTATACATTTTATTGTTGCAATTTGTCATGATGTAGGAATAAAAGTATGTTTAGAAGGTGTAGAAACACAAGAAGAGTATGATTTAGTTAAACAAATAAAGCCAGATTACATACAGGGATATTTATTTGGAAAACCGCAGACAGCAACAGAAATCTTTGACCTTTTAAAGCTAGATAATTAATTCTAATTTATCAATAATATTACTAAAAAGCTTTAAAATCAAAAATACATTAAATTATTATATTGAAGATATATCAATTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATATAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAATATAGAAATCTTATCACCTTTTTTATTATTAATTTTGTCAGTGTTTTATTATAAATAGCTTATATAATTACACATTTTTTCTGATTAAATAATGTGATGCTATTTTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCCAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTTATACTTTAACTCTAATTTATCTAAGGCTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATACCTTATTGTAGCACCTATTACAACTTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 614462-614621 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000003.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 614462 29 100.0 37 ............................. CTGAGACGGCAACATATAAAACTCAATATTTAAAATA 614528 29 100.0 36 ............................. GGTACATAAGGTAAATCGTAAATAACTCCAGAAAGA 614593 29 89.7 0 .....................C.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 96.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGCTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTGATAAATTGAAGTTTAACAGTTGCAATATAAGGCGTTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCCAAGTTTATTTTGGG # Right flank : TTAAAAATACTGAAAAACACTTACTTTTATGGTAGGTGCTTTTTTATATTAAAATCTGTGTACTTAATTGAAATATTTGGTAAAATATGTAAGAATTGTATGATATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTTTGATAAAATATGGCTTAACAGTTTAGATATAAGGCATT # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 615224-615716 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000003.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 615224 29 100.0 37 ............................. TTAAATATTTATAATGATATTTCTGAAAGAACTGTTT 615290 29 100.0 36 ............................. ATCGGTGCATTAGTTACAGTTGTGACACCTGACACA 615355 29 100.0 37 ............................. ATAATACATATATCCTTCTTCATAAAAAGAATCCATT 615421 29 100.0 37 ............................. AGTGTTGAACTAGCTTCATCTCTAATCTTAACTGCTG 615487 29 100.0 38 ............................. ATTTGAACATTTGTTACAGCATTAGAGATATTAATTGC 615554 29 100.0 38 ............................. CAAACACTAAAACATATACAGTAAAAGCAGGGGATAGC 615621 29 100.0 38 ............................. ATTAAACCACAAGACTGGAAAGCACCATATATGGACAT 615688 29 79.3 0 ................G....GAAA..C. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 97.4 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTTTGATAAAATATGGCTTAACAGTTTAGATATAAGGCATTGAGGGTATGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTGTTTTACCTTATATTGGAAATTTGTATAAAGATAAATTATAATGATTATATAGATATTTATTAGGGGGATTACGCTATGGGATTATTCAAAAAGAAGGAAAAAGAAAAAGGAATTTGTATGATTTGTGGTAATGAAGGAAATGCTTTAAAAACTGTAGATAATGAGTTCTTATGTGATGAATGCTTTGAAAAATGCAGAGGTGAAATAGCTGTTCTTGGCAAAGGACTAAAAAAACTGACAAGTAAGGAAGTTATAAATGCTGTAGAGCTATGTAAAGATAGTTTTGGAAATTTTGTTAAAAATACATTAATACAAATTGTATATTTAGGAGGGCATCCTTTATTTAATAGAGAAGAAATGATTTGTCTTTTAATTAGAAGTGACAAGATAGTTGTTAAAGCTTTTGGAACAGAACCTATACCTATAGTAGACGTATTTGAAGTTTCCTATTCAGATA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 38547-38706 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000011.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 38547 29 100.0 36 ............................. GCAAGAAAAGTTGCTTGCGGAGCTGTTGGGTTGATA 38612 29 100.0 36 ............................. GCTTGTTTAAAAATACTTTTCACAGTTCGAAGTGGT 38677 28 86.2 0 ....................A.CT....- | GA [38698] Deletion [38705] ========== ====== ====== ====== ============================= ==================================== ================== 3 29 95.4 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATGATATAATAATTGTAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGAATTGTGTCAGCTTACATTTACGAGAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATATCACAAATTTATACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGAAATTAAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCGAATTTGAGAGATTTGTATATGTGTAGGTATTGGAAATACTCAATTTATTTTGGG # Right flank : AAAGTTACAATGAGTAGAAGAAGATTTCTATTTATTGTAACTTTTTTTGTTGTAAATTTAAAATTACAATATATTATAAAAATAATTATACAAACAAGAAAATACAAAAAATTATAATTAAAAAGACGATTAATAATACACGGGAATGGAAAAAATTACCAACTGTCTACAAATTTCGATTTTTTTGTTACAATTCCCCTTTTTTTATTGCATATATTTAACAAAAGTATTATTATGTAAGTAAGATAATTATCTAAGAAAATTTCGAATAATTAAAAAACATTTCTAGAAATGAAAATACATAGTTATATTTTATTAAAATTCATTAGGGAATTTTGACTAAAAATAAGAACGTAAGTTCTGATAGTAGGGGGAAGGCGTGTGGAAAAATCAAAAAAACTACTAATTGACACAGGGGATACATTGAACAAATTAAGAGAAAATAATAGTGAGAAGTTAGAAAAGTACATAGAATTATTAAAAGAATATTATAAACAAGA # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 44472-44876 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000015.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================== ================== 44472 29 100.0 37 ............................. ACTTCCACTTCTGTGATGATGCAATCCGTTATGACAT 44538 29 100.0 38 ............................. TTTCGATATGTTAATAATAATGAACAAATAATTTTAGA 44605 29 96.6 212 ........................C.... AATAGAAATAAAAGTCTAATAAAATAGAGAATCAAATATAATCATCTGATTCTCTATTTATCTTCTTCCCAATCTTTAATAAACTTTTCTAAACTTTTTAATTTATTTTCAGATATTTCTTCATCATCATGTAAAGCACTTAACAAACTTTCAAATGAATTTCTATGAAAGAAACTAAAGAAACTCTTAGTCTCAACTTTCAAATATTCTTC 44846 29 79.3 0 T....C........TT..AA......... | TG [44857] ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================== ================== 4 29 94.0 96 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : AATAGTTAAAATGGTTGAAAATACAGATTCCGATTTGGGATTTTATATTAACTAAGTGGTATGTAAATGTAGGAACTGACTTCATAAGAATATACAATAACAGTGCTTTTATATTAACTAAGTGGAAAACAGAGTGGTTTTAAACTACTCTGTTTTTATATAAAGTAAAAATAGAAATATAAATTAAGAAAGAAGTGCATATATAAGTTATAAAATAAATTAAATAATAAGTTTTATAAAAATGTATATATAAACTTAAATGATTTTGGTTCTCTATACTCAGTTTATTTAATAAACTAAAATTTTTATTAGATAATTTATGCTATAATAAATATATAAATATGCAGTGTGCGATATTTTGAAAATAAATGCTATAAGGGTTGTAAATACTGAATTATAATGTGTTTTTAAAAATATCAAAAAAACACTACTTGTGGCTCACTGCAAATTTCAATATTTTCTGTATCTGAAAGTATTGAAAATGCCCAATTTATTTCGGG # Right flank : TCTATCTTTCTTAACAACTTCTAAAAATCCTCTACCAACTAACCTTCTTAAAAAAGTTAACATAGTTGATTTTTTCCATTCATATTTTTCACCTAGCGTCTTCAAAATTTCAGTAGATGCAACTTCTTCATCTTCACTATCCCAAATGTACATCATTACCAAAAGCTCTGACTCTGGAATCTTTTTTATTTTCAAGTACTACACCCCCGTTTTTTGATATACTATAATACTATTACAATAGAATTTAATTTACAATGAAAAATGTCTAATTATGCATTCCAATTTTTTCCAATTAATTCTGATTATAAAAAATACTTTAATATGCTAATTATAAAGACATATTATAATATTAAATAAATTATTTATTTAATATTATAACTTAAAAGCAGTTCGAAAAAATGTATACAATATAAGTGAAAGTCTTTATTGAATGCCATTTAGTACAACAAAATATTTGCTATATACCTAATAAAATTCTTTTGATGTCATGATATTACAGT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12663-12230 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000001.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 12662 29 69.0 176 TGAAA.......T...A..T......T.. TAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAACAGTTGAAATATAAGGCATTGAGAATATATGATAAGTATTATCAATTGCACTATTGCGCGTTTACTGCAATTTTAAGAGTATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG A [12638] 12456 29 100.0 36 ............................. GAAACTCTGAATCATCTACTTTGACATTATCAATAG 12391 29 100.0 39 ............................. CTGCTACTGCTCCCTAATACTTTAATTTTCATCTTTAAA 12323 29 100.0 36 ............................. ATTTCTAACAGTATATGTGAAATGTATACTTTACTT 12258 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 5 29 93.1 72 GTTTTATATTAACTATGTGGTATGTAAAA # Left flank : ACTAAAATATTTTGAAATTCTTCAAGATTTTCTATACTAATTTTTTTTTTACTATCTTTACTTAATAAACTATATGCTGTTTCATAGTCACCAGAGTTCATCTTATCAATATATTTTTTTGCAACTTCACTGGCACTTTCTCTTGGTGAACATCCTGTCATTAATATCACAATTAATAATGTTAAGAGTAAAGTTATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTATTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGCCCATCTCTTCTAAAACCTGAGAGTATCTATTCATAGTTATTTTTATATCTGTATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATACAGTTAAAAATTAAT # Right flank : TTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGGTAATGTATATAAAAAAGAGTTAGAACTTGGAGAATATGTGGTATTAGGCTGGACCAATGAAGAAATATTAAAAGCTGTTATGGGGGTAGAACATAATTTTTTAAAATTATATCTGAAAGTGATTAGAAATTTTGAAGATGCTGAAAAAGTAAAAAGAATACAACTCTGTTATGTCAACATTTTTGTTAACAGATTTAGATTATAAATACATAAAAGAAATGATGTTAAAGTTTAATTTATGGGATGATGAATTAAGTGAATTAGAAAGTACAGTAAAAGAAATAATGTTAGATTCAGAATGAAATATATATTAAAATAACTAGATACAATTTGGATAGATAATGTTATGATTTATTTAAGAAAATGGCACAGTATTTTA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 597215-596988 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000001.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 597214 29 100.0 39 ............................. ACGCATTAGGAGTATCAGTTGATGAACTACTATGTGATA 597146 29 100.0 36 ............................. TTAATGTTTGGAAGACATTACTCGGGATTAATACCA 597081 29 100.0 36 ............................. TATCTTTTACAATAGCCACATACCCCTCTATTAGCT 597016 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 4 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAGGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCATAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATGTGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCAAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATTATATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGGCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGATATGAACGTAATTTCACGCTTAAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 921873-921116 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000001.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 921872 29 100.0 37 ............................. CATAGATTTTTTAGAAGATTTTACAAGGTCAACAATA 921806 29 100.0 37 ............................. TATTATTCTGCCTCCAATTCAAAGTGCTTCATTTTCA 921740 29 100.0 37 ............................. ATAGAATGGGTGTTTTGGATGGGCTTGACCTAGCTGA 921674 29 100.0 37 ............................. TTTTTCTTAATAATTAAAATTTTAACTTCTTCCGCTT 921608 29 100.0 37 ............................. ATAGGTTTAAAGTAAGATATAGAACTGATATAACCGA 921542 29 100.0 36 ............................. CGCATTTATTACAGCTTTTCTGAAAGCCTCATTTTT 921477 29 100.0 37 ............................. CCGGATTTTTCTGCTTCGACTGGTGTTATTGAGACTT 921411 29 100.0 38 ............................. AAACTAAAACCATGTATCACATAATTTTTAAATAAATC 921344 29 100.0 38 ............................. CCACGTATTCCAGTATTGAATGCTATTTGCAAAGGAAT 921277 29 100.0 38 ............................. ATTTGAAAGTTGTGTTATTTTTTCTATTAAACTCGCAA 921210 29 100.0 37 ............................. AAGATTCTATTAGAAGTGTTAAAATGTTTCAAAACAA 921144 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.7 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATACGATACTTACTTACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAGAAGCTTCTTTATCCATATCATCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACATATATGCAAGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCCCTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGACCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 266567-265035 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUND01000002.1 Clostridioides difficile strain VRECD0174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 266566 29 100.0 37 ............................. CGAGATGTTATTTCATTAGCTTTTTCTTCTAATGCTA 266500 29 100.0 36 ............................. AAGGCTCAAAAAGATTTTTATAGAAAAATGAAAAAG 266435 29 100.0 37 ............................. ATAGCTCCCAGGCTTGCGCCAATTCCAGCTATCGCAA 266369 29 100.0 36 ............................. ATGTTTGGGCTAATAGATGGTGACGCTGTCAATTAT 266304 29 100.0 37 ............................. ATGTATCTATAATCTCAATTAAATCCTTTAAATTCCT 266238 29 100.0 36 ............................. ACGACTGTTTTGTAGGGTAACTATGTCCAATTTTAG 266173 29 100.0 37 ............................. GAAGTTCAGAACATAATCTAACACTTTTAGGGTTTTT 266107 29 100.0 36 ............................. GACTCTGCCATCCCTGTAACGAACAGTCTTACAGCA 266042 29 100.0 36 ............................. ATATTTCTATGCTTTTTGTGTGATGGAAATAGAAGG 265977 29 100.0 37 ............................. TGGGATATATATTCTCTTTTTATTGGTTTTGATGTAG 265911 29 100.0 37 ............................. CTTTCAGTAGTAGTCCACATTGATTATAAAAAAGCAC 265845 29 100.0 36 ............................. TAATTATTTCATCACACTCAAATACTAAATACCAAA 265780 29 100.0 37 ............................. CTTTCAAGGGTTGGAGTAACTGTTATTTTTGTATTCC 265714 29 100.0 36 ............................. GAAATAAAGAAGGTCGTAATATTGATTTTGCAATAG 265649 29 100.0 36 ............................. GTTGTTTCTGTTAAACCTTCTTCTATTTCTAATAAA 265584 29 100.0 38 ............................. TGGCATACAATACATAATTTTATGTCTTTTCTACTGAC 265517 29 100.0 38 ............................. ACAAAAATAGTAGATTACCTTTTTCAAGCCGCCTACTT 265450 29 100.0 36 ............................. AAGATTACTGGTAAGGGGCAAATATACTTTATCAAT 265385 29 100.0 34 ............................. TGTTTTTTTCTCTTTACAGGGTTAGGCAGATTCA 265322 29 100.0 36 ............................. TCTAAAAGGTCACATATATTTATTAAATCTGTTGCA 265257 29 100.0 36 ............................. ACTTGTCTAGCTATTCAGTTTTTATTTTATCACCTG 265192 29 82.8 36 ................A.....GA...GT AGAATATTAGCAATATAAACGAGTATTTAGAAACTT 265127 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCA 265063 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 97.3 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGTAAAATCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGTAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGAAACATAAGGGATTGAAGGTGTATGATAACTATTATCGATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATAATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAGATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATATAGGTATCGGAGGTAAACTTTTAGATTACGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //