Array 1 4515-3531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAMQ010000025.1 Neisseria meningitidis strain 36252 NODE_25_length_28078_cov_42.295598, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 4514 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 4448 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 4382 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 4316 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 4250 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 4184 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 4118 36 100.0 54 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 4028 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 3962 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 3896 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 3830 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 3764 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 3698 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 3632 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 3566 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================== ================== 15 36 99.8 32 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //