Array 1 12614-9217 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXKE01000026.1 Streptobacillus moniliformis strain TSD4 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12613 36 100.0 30 .................................... TTTTCCTTTTTGTAAAGCTTCTTTGTAAAC 12547 36 100.0 29 .................................... GCCTCACTTGAAATATTTCCCAATATATC 12482 36 100.0 30 .................................... TGATAGAAAACTTTAAAAAGATAGCTAAAG 12416 36 100.0 30 .................................... AATAATTTAATCCTTCATCATATATTTTAG 12350 36 100.0 30 .................................... GTTATTTCTTCACAAACATACACAAGGTAA 12284 36 100.0 30 .................................... AAGTTTTAAAGGCAGTTAAACAGAATGGAG 12218 36 100.0 30 .................................... AATTAACTCCAGCCCAACAATTGTTAGCAC 12152 36 100.0 29 .................................... TCAGCTACTGAGTTATCAAGTAGACCTAT 12087 36 100.0 30 .................................... AAAAAAAATAGTATTTATGTTTTTACTTTT 12021 36 100.0 30 .................................... AGGTAGGGGTTGAAATAAATCAAAAAACGG 11955 36 100.0 30 .................................... TTCTTAATTGTTCGTTATATATCAGGTTGT 11889 36 100.0 29 .................................... TGATACATTCTTTATCATTGCTTGAAGTA 11824 36 100.0 30 .................................... AATGCAAGAGATTTAGCCAACATTAATCTA 11758 36 100.0 30 .................................... ATTAAAATTATTTGAAGTTAAGAGAAAAGA 11692 36 100.0 30 .................................... TAACTCAAGCACAGCAAAGAGGACACTTGC 11626 36 100.0 30 .................................... TTATTGGACGTTCCAGTATACACGTATGAG 11560 36 100.0 30 .................................... TTATTATGTTACCAATATATTTATTTGTCA 11494 36 100.0 30 .................................... ATTTGGTTGGAGAGGAATATACGACGAATA 11428 36 100.0 30 .................................... TTTGGGTATGGGTATTGCACAAGCATTTGC 11362 36 100.0 30 .................................... AAATAGAAAAAGGTATTACAAATGTTTCGG 11296 36 100.0 30 .................................... TATATCTATATATGCTAAAGTATTAGAAAG 11230 36 100.0 30 .................................... TTTCTACTATTAACTTAAGGGCTTTTGTTT 11164 36 100.0 30 .................................... ATTTGAATTTGATGATGCAAAAGAGGAATT 11098 36 100.0 30 .................................... AAAGGTGGGCATTTACTTCTTGACTTTATC 11032 36 100.0 30 .................................... TTCCTTTGTTGGCTTATAACTTGATTTTTA 10966 36 100.0 29 .................................... AGAATATGCAAGCGACAGATTAAAAGATG 10901 36 100.0 30 .................................... TTCTTGAAAGTTTTAATGACAAAAAGACTA 10835 36 100.0 30 .................................... AATTTTTTTTATTGTTTTTATATAAAATCT 10769 36 100.0 30 .................................... GTTCATTCTGGATTAAAAAGACAACAGACC 10703 36 100.0 30 .................................... AATTTATTTAAATTATAAAGTTGAATTGTA 10637 36 100.0 30 .................................... AAAACGTTCAGTTAAACGAAAGTTTTATAA 10571 36 100.0 30 .................................... TAACAGCGGAGAGTTGTTGACAGAGCAGAA 10505 36 100.0 30 .................................... AGGAATTACGAAATTTCAAGTAAATAATAT 10439 36 100.0 30 .................................... GACCACACTATCACCTGATAATTATAGGAA 10373 36 100.0 30 .................................... AAACAAAATTTGATTTTGCAACGCCGGAAT 10307 36 100.0 29 .................................... CAATAATATGAGAACTAAGCCCAGATACA 10242 36 100.0 31 .................................... TATTTGGTTGGAGAGGGATATACGATGAGTA 10175 36 100.0 30 .................................... AAACTACAACATAAGAGCACCAAAAGTTGA 10109 36 100.0 30 .................................... TTTCATTTTTTACTCTCCTTTAATTTCTAT 10043 36 100.0 30 .................................... AAAGATGAAAAGAAAGATACAAGTAAGAGA 9977 36 100.0 30 .................................... TTTTTTGAACTCCATAAAATATTATGGTTC 9911 36 100.0 30 .................................... TGAGTTTAATGTTCCCACAAAAGAGCAAAT 9845 36 100.0 30 .................................... AAATTAAGGCTGAATTTGAAGCAAAAGAAA 9779 36 100.0 30 .................................... GAGATATTTTTGGGCAAGCCTGGGGATCCA 9713 36 100.0 29 .................................... GAATATTAAATTGTAAGCCATCAAAGGGA 9648 36 100.0 30 .................................... TAGATTTATTTAAAAGTGGTTGTAGTGATA 9582 36 100.0 30 .................................... AATTTAAAGAGGCATTTTACATTTTAGATG 9516 36 100.0 30 .................................... ATGATTTTGGCAAGAGCTTTTCAAATTCAA 9450 36 100.0 30 .................................... ATTGTAAAAAGTATATAAGGAAGTGAAACA 9384 36 100.0 30 .................................... GTGGTTCAACCTCTACTTATGCTAGAAAGT 9318 36 100.0 30 .................................... TTTTTTAAAAAAAAAGGCTTAAAAATCTGA 9252 36 77.8 0 .............AC.......A...G..T.TTG.. | ========== ====== ====== ====== ==================================== =============================== ================== 52 36 99.6 30 GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Left flank : AAAAGTTATCTAAACTTTTTAGAAGAAGGTAATGAAATGCTGGCTATACCTGAAATAATAAAAATAGATTTTTATGACCTTTTTAAAGAGTTATAGAGAAATGAGATTACTTGTTTACTTTGATTTGCCAGTATCAACTAAATTAGAAAGAAAACAAGCTCAGGATTTTAGAAAAAATTTGTTATCTGAAGGATTTATTATGATGCAATTTTCTTGCTATTCAAGATTTTGCAGAAATGATGCTGAATCTTCAAAATATTTTAATAGAGTAAAAAAATTGAGTAATAAATTAAGTGGTGGAGAAGTAAGAATTTTAAAAATTACTAACAAACAATATGAAAATATGTTAATATTAGTAAAAGAACCTAAATTATCTGAAATAAAGCTTTCAAAAAATCCATTGGTTATTTTTTAGTGTGAATTTTGTGCTAATGGATTGATTATTTAAATTTCAAACTGTATTTTCTAGCAATAAAATTATATTAATTTCATTGCTAGAG # Right flank : TTGACTTTTTTAAATATTATGCTATAATAATTGTGTAGATAAGATTCACATTATTCAAGTTTACTACAGATTCTGTATTAAGATACAAAATCGTAAGACTGGCTGCCTTAAGCAGCTTTTTTTATTTTAAATAATTCTTAATTATGTCAAATTCTTTTTCTTTTCGGATTTTCTCTATTTTATTTTCTATTTCTTTTTCTGAATAAAGGTATACTTCATCAATAAAATTAATATATCTAGGTAACTCAACTAGTTTGTTATTATCAATAAATAATACTTTGTGTCCACTAGAAACTAATTCATATACTATATCTTCATTTTTCACAAAAAATATACATTTTGTATTGAAATCCTTTATTTTAGATAATATATATGATACTTTTTCAAAAAATTTATTCTTAGTATAAATACTATCAAAATCATCAATCAATAATACAGTGTTATCATTTACACTAATTAATCTATTTAAATATATTTCAAGTTGTATATTTACTTTTTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //