Array 1 3368-2486 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJU01000047.1 Erwinia amylovora strain OR1 NODE_22_length_3418_cov_2.61349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3367 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 3306 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 3245 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 3184 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 3123 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 3062 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 3001 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 2940 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 2879 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 2818 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 2757 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 2696 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 2635 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 2574 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 2513 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CGTGAGCGGGGATAAACCGACGATTTGCCTGAAACCTCAACGAAGTTCGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19461-19132 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJU01000088.1 Erwinia amylovora strain OR1 NODE_4_length_225874_cov_51.3754, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19460 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19400 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19340 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19280 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 19220 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 19159 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31945-28924 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJU01000088.1 Erwinia amylovora strain OR1 NODE_4_length_225874_cov_51.3754, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31944 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 31883 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 31822 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 31761 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 31700 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 31639 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 31578 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 31517 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 31456 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 31395 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 31334 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 31273 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 31212 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 31151 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 31090 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 31029 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 30968 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 30907 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30846 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30784 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30723 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30662 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30601 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30540 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 30479 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 30418 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30357 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30296 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 30235 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 30174 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 30113 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 30052 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29990 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29929 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29868 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29807 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29746 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29685 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29624 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29563 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29501 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29440 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29379 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29318 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29257 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 29196 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 29135 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 29074 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 29013 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28952 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46961-40984 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJU01000088.1 Erwinia amylovora strain OR1 NODE_4_length_225874_cov_51.3754, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 46960 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 46899 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 46838 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 46777 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 46716 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 46655 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 46594 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 46533 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 46472 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 46411 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 46350 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 46289 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 46228 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 46167 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 46106 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 46045 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 45984 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 45923 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 45862 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 45801 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 45740 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 45679 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 45618 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 45557 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 45496 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 45435 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 45374 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 45313 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 45252 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 45191 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 45130 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 45069 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 45008 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 44947 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 44886 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 44825 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 44764 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 44703 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 44642 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 44581 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 44520 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 44459 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 44398 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 44337 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 44276 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 44215 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 44154 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 44093 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 44032 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 43971 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 43910 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 43849 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 43788 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 43727 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 43666 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 43605 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 43544 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 43483 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 43422 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 43361 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 43300 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 43239 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 43178 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 43117 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 43056 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 42995 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 42934 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 42873 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 42812 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 42751 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 42690 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 42629 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 42568 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 42507 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 42446 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 42385 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 42324 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 42263 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 42202 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 42141 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 42080 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 42019 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 41958 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 41897 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 41836 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 41775 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 41714 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 41653 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 41592 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 41531 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 41439 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 41378 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 41317 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 41256 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 41195 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 41134 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 41073 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 41012 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 98 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //